Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 0.0e+00 1889.4 985 100.0
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 3.4e-181 639.8 496 67.1
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.9e-173 612.5 495 65.1
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 7.7e-173 612.1 495 65.1
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.9e-171 607.4 494 64.8
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 2.5e-171 607.1 493 64.7
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.3e-167 594.7 477 66.0
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 4.8e-167 592.8 495 62.8
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 4.5e-165 586.3 494 64.2
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-164 585.1 475 65.3
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.9e-163 580.9 493 63.5
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 4.2e-163 579.7 494 62.6
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 8.8e-161 572.0 494 60.5
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 7.4e-160 568.9 496 61.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 8.2e-159 565.5 490 60.8
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 9.1e-158 562.0 493 59.6
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 4.5e-157 559.7 493 60.2
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 6.5e-156 555.8 493 59.8
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.1e-155 555.1 495 58.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.5e-155 554.7 497 60.2
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.6e-154 551.2 497 57.9
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 2.1e-154 550.8 482 60.4
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.8e-153 547.7 494 57.9
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 3.0e-153 547.0 479 59.9
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.1e-152 545.0 494 57.9
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 9.7e-152 542.0 495 60.4
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.7e-151 541.2 497 56.7
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 2.2e-151 540.8 492 57.9
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 2.8e-151 540.4 485 59.2
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 3.7e-151 540.0 492 57.5
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 6.3e-151 539.3 483 58.2
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.1e-150 538.5 495 58.4
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 1.1e-150 538.5 497 56.3
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.1e-150 536.6 485 57.9
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 4.1e-150 536.6 494 59.3
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 7.0e-150 535.8 494 58.3
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.5e-149 533.5 493 57.8
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.5e-149 533.1 493 57.8
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.2e-148 530.8 485 58.4
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 5.0e-148 529.6 499 57.9
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.5e-148 529.3 485 58.4
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 8.5e-148 528.9 493 57.4
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.9e-147 527.7 485 57.1
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 5.5e-147 526.2 496 57.1
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 5.5e-147 526.2 496 57.9
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 5.5e-147 526.2 489 58.3
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.2e-147 525.8 491 55.8
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.7e-146 523.9 485 56.5
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 4.7e-146 523.1 473 58.6
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 8.0e-146 522.3 372 72.0
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.0e-145 521.9 496 56.5
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.0e-145 521.9 495 56.2
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.5e-144 518.1 482 56.8
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 2.6e-144 517.3 498 55.8
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-144 517.3 493 56.8
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 4.4e-144 516.5 493 57.0
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.4e-144 516.5 493 57.0
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 4.4e-144 516.5 479 58.5
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.2e-143 514.2 485 56.3
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 3.7e-143 513.5 541 51.9
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 6.3e-143 512.7 488 57.2
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 8.3e-143 512.3 486 57.2
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 1.8e-142 511.1 489 57.1
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 1.8e-142 511.1 489 57.1
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.8e-142 511.1 483 57.8
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 3.1e-142 510.4 493 55.4
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.1e-142 510.4 494 55.9
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.1e-142 510.0 482 54.8
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 4.1e-142 510.0 490 56.3
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 5.4e-142 509.6 495 53.1
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.0e-142 509.2 493 54.0
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 4.5e-141 506.5 492 55.3
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 7.7e-141 505.8 491 55.6
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.7e-140 504.6 495 53.7
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.0e-140 503.1 490 56.3
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 2.5e-139 500.7 497 54.7
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 4.7e-138 496.5 479 55.3
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.2e-136 491.9 493 55.0
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.6e-136 490.7 494 55.1
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.4e-136 490.0 487 54.4
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.7e-135 488.0 477 56.6
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 5.4e-134 483.0 496 54.2
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.2e-133 481.9 495 54.9
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.0e-133 481.1 488 53.3
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.0e-133 481.1 497 53.5
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 4.5e-133 479.9 487 52.8
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.5e-131 474.9 421 59.1
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 6.8e-129 466.1 487 52.0
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-128 465.3 486 52.9
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 9.8e-128 462.2 487 50.9
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.2e-127 461.1 487 53.4
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.2e-127 461.1 490 54.9
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-126 458.8 486 52.9
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.4e-126 458.4 486 52.1
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 7.0e-126 456.1 492 51.2
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.0e-124 452.2 486 51.4
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.0e-124 452.2 486 49.8
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.9e-124 450.7 489 49.9
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 3.9e-124 450.3 489 51.1
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 5.0e-124 449.9 489 50.3
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 5.0e-124 449.9 485 50.9
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 6.6e-124 449.5 374 62.0
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.2e-122 445.3 486 50.4
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 2.4e-118 431.0 384 59.1
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 9.5e-115 419.1 467 51.4
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 4.7e-114 416.8 497 46.3
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.7e-111 408.3 487 48.5
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.3e-108 397.9 486 48.6
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.1e-102 379.0 435 48.7
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 5.4e-102 376.7 526 42.4
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 9.6e-99 365.9 376 53.5
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 9.9e-96 355.9 410 51.0
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 8.4e-95 352.8 494 41.5
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 2.7e-93 347.8 465 44.1
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-90 339.0 287 62.0
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 8.1e-90 336.3 288 62.5
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-89 335.9 490 42.9
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 5.3e-89 333.6 478 43.5
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 9.0e-89 332.8 327 55.7
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.2e-88 332.4 290 61.4
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.6e-88 331.3 411 46.0
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.5e-85 320.9 266 64.7
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.1e-83 315.8 388 50.8
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.5e-80 303.9 492 39.2
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.9e-78 298.5 412 42.0
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 6.7e-76 290.0 251 63.7
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 6.9e-73 280.0 426 39.2
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.1e-70 272.7 355 43.9
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.0e-68 266.2 374 42.8
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 2.5e-67 261.5 184 72.8
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 4.8e-66 257.3 292 53.4
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.9e-65 253.4 234 55.1
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 2.0e-64 251.9 292 47.9
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.9e-63 248.1 311 46.6
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 7.9e-61 240.0 539 33.2
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.9e-59 235.3 155 72.9
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-58 232.6 693 29.3
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.6e-58 232.3 487 33.9
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-57 229.6 485 34.0
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.4e-57 229.2 184 64.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.4e-57 228.4 377 36.9
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.5e-56 225.7 592 31.2
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.7e-55 222.2 473 33.2
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 2.5e-54 218.4 229 51.5
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 3.2e-54 218.0 486 31.7
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.6e-53 215.7 171 64.9
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 2.3e-52 211.8 252 50.8
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 8.2e-50 203.4 429 31.9
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.4e-46 192.6 279 44.4
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 5.5e-46 190.7 422 32.5
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.7e-42 179.1 365 35.6
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 2.6e-40 171.8 479 30.1
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 1.5e-35 156.0 256 35.9
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.5e-35 156.0 145 55.2
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 5.7e-35 154.1 264 37.5
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.8e-34 151.8 452 30.5
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 1.8e-33 149.1 128 60.2
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.1e-30 139.8 98 67.3
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.1e-30 139.8 115 63.5
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.2e-30 138.3 122 52.5
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 9.4e-30 136.7 93 71.0
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 4.5e-24 117.9 125 48.8
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.7e-23 115.9 124 48.4
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 2.3e-20 105.5 117 49.6
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 3.0e-20 105.1 161 41.0
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 5.7e-19 100.9 308 31.2
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 7.0e-17 94.0 103 43.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.3e-10 73.2 179 27.4
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-10 72.8 72 52.8
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 2.2e-10 72.4 146 36.3
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 9.5e-06 57.0 117 26.5


User provided reference genes

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