Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 2.9e-137 491.9 247 100.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 4.2e-104 381.7 245 81.2
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.5e-96 356.7 246 75.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.5e-90 335.1 246 70.3
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.3e-89 333.6 248 71.0
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 3.8e-89 332.0 245 71.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 5.5e-88 328.2 247 71.7
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.1e-87 326.2 247 68.8
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.8e-86 323.2 244 70.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.2e-86 321.6 250 69.6
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 5.2e-86 321.6 247 68.0
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.8e-86 321.2 247 67.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.6e-85 319.3 243 68.3
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.3e-84 317.0 251 67.3
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 2.8e-84 315.8 244 68.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 8.3e-84 314.3 203 79.8
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.8e-83 313.2 251 66.9
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.8e-83 313.2 207 76.8
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.7e-81 306.6 248 65.7
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 3.8e-81 305.4 258 63.2
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 8.6e-81 304.3 247 66.0
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 8.6e-81 304.3 235 68.9
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.5e-80 302.8 252 65.9
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.3e-80 302.4 249 65.9
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 9.5e-80 300.8 241 66.8
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.1e-79 299.7 248 64.1
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.1e-79 299.7 248 66.5
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 3.6e-79 298.9 248 65.3
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 4.7e-79 298.5 250 63.2
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 6.1e-79 298.1 250 65.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 6.1e-79 298.1 263 60.5
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 8.0e-79 297.7 196 77.0
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 8.0e-79 297.7 208 75.5
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.8e-78 296.6 248 64.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.3e-78 296.2 241 68.0
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.0e-78 295.4 235 67.2
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.0e-78 295.4 232 70.3
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.2e-78 295.0 207 74.9
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.2e-77 293.9 235 66.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 9.8e-77 290.8 232 66.4
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.9e-76 289.3 242 64.5
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 2.9e-76 289.3 251 65.3
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.3e-76 287.7 241 66.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 8.3e-76 287.7 218 69.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.1e-75 287.3 252 64.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.8e-75 286.6 252 62.7
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 5.4e-75 285.0 248 62.9
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.6e-74 283.5 214 69.2
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.7e-74 282.7 227 66.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.9e-74 281.6 268 60.8
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 7.8e-74 281.2 209 71.8
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.0e-73 280.8 251 61.4
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.3e-73 280.4 247 60.7
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.3e-73 279.6 251 61.4
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.9e-73 279.3 245 62.0
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 2.9e-73 279.3 247 61.9
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.9e-73 278.9 236 64.0
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 5.0e-73 278.5 278 59.0
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.6e-73 278.1 245 61.6
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.5e-72 276.9 245 61.6
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.9e-72 276.6 242 65.7
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 9.5e-72 274.2 283 55.1
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 6.1e-71 271.6 259 59.8
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.4e-70 270.4 207 70.5
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.1e-70 269.2 208 69.7
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 8.9e-70 267.7 180 76.1
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 8.9e-70 267.7 244 63.9
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.6e-69 266.2 252 58.3
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 4.4e-69 265.4 220 66.8
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 5.8e-69 265.0 250 58.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 9.8e-69 264.2 250 58.8
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.2e-68 263.1 213 66.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 3.7e-68 262.3 265 58.1
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 6.4e-68 261.5 255 60.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.4e-67 260.4 250 58.4
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.9e-67 260.0 304 53.0
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.4e-67 259.6 234 60.7
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 9.2e-67 257.7 217 65.4
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.2e-66 257.3 205 67.8
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.7e-66 256.1 240 60.8
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.0e-65 254.2 282 55.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.0e-65 254.2 240 59.6
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 3.9e-65 252.3 248 61.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.9e-64 250.0 177 74.6
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 4.3e-64 248.8 246 59.3
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 9.5e-64 247.7 181 74.0
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 9.5e-64 247.7 204 66.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.8e-63 246.1 236 58.1
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.6e-63 245.7 228 61.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 8.1e-63 244.6 251 56.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 8.1e-63 244.6 251 56.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 6.8e-62 241.5 203 63.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 8.9e-62 241.1 215 62.8
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 3.4e-61 239.2 207 64.3
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.9e-60 235.3 252 51.6
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.6e-58 230.3 246 55.7
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.6e-58 230.3 240 57.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.5e-58 229.2 244 57.0
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 7.8e-58 228.0 220 60.0
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-57 227.3 211 59.7
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.3e-57 226.5 203 58.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.3e-57 226.5 257 51.8
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-57 226.1 257 51.8
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 3.0e-57 226.1 257 51.8
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 3.0e-57 226.1 211 61.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.9e-57 225.7 197 62.4
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 5.1e-57 225.3 257 51.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 8.6e-57 224.6 256 50.8
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.5e-56 223.8 177 67.8
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.9e-56 223.4 230 56.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 2.5e-56 223.0 251 54.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.1e-55 219.9 193 58.0
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 5.2e-54 215.3 235 55.7
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.0e-53 213.4 250 52.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 9.9e-53 211.1 180 60.0
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 3.7e-52 209.1 266 49.6
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-51 207.6 191 55.0
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-50 204.1 254 48.8
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-50 203.8 258 48.1
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.1e-50 203.4 174 60.9
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.7e-50 203.0 197 58.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-50 203.0 265 48.7
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.7e-50 203.0 265 49.1
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 6.0e-50 201.8 261 49.4
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 3.9e-49 199.1 187 55.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 5.1e-49 198.7 165 63.0
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.6e-49 198.0 138 77.5
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 4.3e-48 195.7 179 60.3
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 5.2e-46 188.7 197 55.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.8e-46 188.3 177 54.2
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.8e-45 185.3 197 53.8
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.1e-43 181.0 116 70.7
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 7.1e-43 178.3 139 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 9.3e-43 177.9 147 59.2
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.7e-42 176.4 176 55.1
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 4.6e-42 175.6 185 53.0
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 3.0e-41 172.9 144 70.8
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 1.3e-39 167.5 194 51.5
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.1e-38 162.9 135 68.9
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.3e-38 162.2 137 69.3
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 9.0e-38 161.4 255 40.4
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.1e-35 154.5 162 55.6
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 3.9e-33 146.0 148 60.8
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 3.9e-33 146.0 163 48.5
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.5e-32 143.3 103 67.0
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.3e-32 142.9 138 55.1
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.3e-32 142.5 118 57.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 4.3e-32 142.5 155 55.5
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 5.3e-30 135.6 132 64.4
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 5.8e-29 132.1 109 58.7
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-24 116.7 93 53.8
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 4.3e-24 115.9 253 39.1
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.3e-24 115.9 149 55.0
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 2.1e-23 113.6 118 44.1
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.8e-23 113.2 251 38.2
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.2e-21 107.8 63 71.4
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 5.8e-21 105.5 167 40.7
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.3e-20 104.4 103 58.3
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 7.1e-19 98.6 87 62.1
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 6.0e-18 95.5 138 51.4
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 7.9e-18 95.1 99 60.6
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 5.1e-17 92.4 104 59.6
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.4e-14 83.6 65 61.5
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 3.8e-12 76.3 114 39.5
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 5.5e-11 72.4 80 47.5
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 9.3e-11 71.6 70 54.3
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.6e-10 70.9 53 56.6
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.8e-09 67.4 67 47.8
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.6e-07 60.8 50 50.0
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 8.2e-07 58.5 45 73.3
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 8.2e-07 58.5 45 73.3
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.4e-06 57.8 48 50.0
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 3.1e-06 56.6 89 41.6


User provided reference genes

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