Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 6.8e-263 910.2 495 100.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 3.6e-171 605.5 507 66.9
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 6.0e-142 508.4 505 60.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.8e-139 499.6 525 56.0
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.8e-139 499.6 525 56.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.6e-134 483.8 538 53.7
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.8e-131 473.0 500 54.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.1e-131 471.5 507 55.2
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.0e-129 466.8 496 53.4
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.4e-129 466.1 520 53.1
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 4.9e-128 462.2 500 53.2
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 4.9e-128 462.2 504 53.6
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.1e-127 461.1 500 53.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.4e-127 460.7 498 53.0
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.4e-127 459.9 504 53.4
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 5.4e-127 458.8 507 52.5
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.1e-126 456.8 500 52.8
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-125 454.5 512 52.9
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.0e-125 454.5 519 51.8
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.9e-125 452.6 517 53.6
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.1e-124 451.1 510 54.7
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.5e-124 449.9 545 51.9
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.5e-124 449.9 514 52.3
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 5.6e-124 448.7 503 51.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.1e-123 446.8 516 53.5
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 8.1e-123 444.9 514 51.8
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.1e-122 444.5 505 52.7
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.4e-122 443.4 518 52.1
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 6.9e-122 441.8 506 52.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 9.0e-122 441.4 512 52.5
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.7e-120 437.2 501 50.9
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.8e-120 436.0 501 50.9
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.9e-119 433.7 535 49.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.4e-119 433.3 512 52.0
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 5.5e-119 432.2 454 51.5
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 6.0e-118 428.7 506 50.8
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.8e-117 427.2 500 51.8
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.0e-117 426.4 498 51.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.9e-117 426.0 503 51.3
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.6e-116 422.2 498 52.4
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.8e-115 419.9 496 49.8
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.4e-114 417.5 498 50.8
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.4e-114 417.5 536 48.3
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.1e-114 416.4 497 51.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 9.0e-114 414.8 499 50.5
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 9.0e-114 414.8 499 50.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.4e-113 412.9 500 48.6
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 4.5e-113 412.5 505 52.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 5.8e-113 412.1 499 50.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 5.8e-113 412.1 502 50.8
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 5.8e-113 412.1 506 53.6
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 7.6e-113 411.8 499 49.9
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 7.6e-113 411.8 506 48.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 7.6e-113 411.8 464 51.5
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.0e-112 411.4 501 49.9
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.7e-112 410.6 501 49.7
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.8e-112 409.5 497 50.1
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 4.9e-112 409.1 531 46.5
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 4.9e-112 409.1 499 50.3
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 5.5e-111 405.6 499 51.1
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 5.5e-111 405.6 460 51.7
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 7.1e-111 405.2 502 51.6
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.1e-110 403.7 499 52.1
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.1e-110 403.7 503 53.5
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 8.7e-109 398.3 462 48.9
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.9e-108 397.1 499 51.1
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.3e-108 396.0 507 47.9
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.3e-108 396.0 467 52.5
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.7e-107 392.9 526 45.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 4.8e-107 392.5 507 46.9
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.1e-106 391.3 348 59.5
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.9e-106 388.7 417 56.6
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.6e-105 386.7 417 52.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.6e-105 386.7 417 52.3
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 4.5e-105 386.0 501 45.7
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 5.0e-104 382.5 530 44.7
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.1e-103 381.3 503 47.7
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.4e-103 380.9 505 44.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.2e-102 377.9 501 47.1
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.6e-102 377.5 502 47.0
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.7e-102 376.7 419 52.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.6e-102 375.9 502 46.4
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 6.1e-102 375.6 418 50.2
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 6.1e-102 375.6 502 46.0
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.0e-101 374.8 501 46.9
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.0e-101 374.8 503 47.1
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.0e-101 374.8 510 46.3
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.5e-100 370.9 505 45.7
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.9e-100 370.5 467 48.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.5e-100 370.2 504 49.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 9.7e-100 368.2 385 54.3
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.2e-99 367.1 497 45.1
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.4e-97 359.8 511 44.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.7e-96 357.5 496 48.2
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.7e-96 357.5 498 47.2
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 3.8e-96 356.3 498 46.6
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.2e-94 351.3 523 45.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.3e-91 339.0 499 45.3
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.8e-90 337.4 504 45.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 5.3e-90 335.9 495 45.3
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 6.9e-90 335.5 496 44.6
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 9.1e-90 335.1 501 41.7
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.9e-87 327.4 480 44.4
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 3.7e-83 313.2 497 42.3
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.7e-83 313.2 570 37.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.1e-82 308.5 470 46.2
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.7e-80 304.3 496 39.9
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.2e-76 291.6 495 39.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.8e-75 287.0 420 43.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 4.8e-75 286.2 446 39.5
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 8.2e-75 285.4 499 40.1
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.1e-74 285.0 331 49.5
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.2e-73 281.6 495 38.6
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.7e-72 277.7 372 46.8
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 6.6e-64 249.2 508 35.8
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.1e-63 248.4 469 36.5
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 3.7e-59 233.4 490 36.9
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.8e-56 223.4 503 34.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.0e-56 223.0 235 55.3
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.7e-54 216.5 746 27.6
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.4e-53 214.9 381 36.7
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 2.3e-53 214.2 431 35.0
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.0e-53 213.8 466 34.1
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.3e-47 192.6 229 52.0
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 5.2e-45 186.4 225 50.2
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.9e-43 180.6 225 51.1
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 6.0e-41 172.9 336 38.4
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 4.7e-38 163.3 406 33.5
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.3e-37 161.0 677 28.7
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.1e-34 152.1 360 32.5
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 7.8e-33 146.0 238 39.9
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 3.1e-29 134.0 624 27.9
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.2e-28 132.1 625 26.6
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 4.9e-27 126.7 229 40.6
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 6.6e-24 116.3 175 41.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 5.6e-23 113.2 138 44.2
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 7.3e-23 112.8 222 37.8
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.4e-21 108.6 92 58.7
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 6.9e-21 106.3 226 34.5
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 2.9e-19 100.9 74 60.8
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 6.4e-19 99.8 158 36.1
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.4e-19 99.8 167 38.3
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.4e-18 98.6 505 25.1
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.1e-18 96.3 231 35.5
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 6.0e-17 93.2 168 42.9
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.7e-16 91.7 120 42.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 6.2e-14 83.2 226 30.5
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 2.4e-13 81.3 563 24.0
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.5e-12 78.6 150 30.7
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.6e-12 77.8 178 31.5
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 3.8e-11 73.9 317 24.6
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 5.4e-10 70.1 188 33.5
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.1e-09 68.2 129 45.0
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.7e-09 67.8 108 44.4
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 5.1e-08 63.5 132 42.4
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 3.3e-07 60.8 46 56.5
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 4.8e-06 57.0 64 42.2
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 6.2e-06 56.6 95 37.9


User provided reference genes

Program Settings