Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0116F.1_g056150 Hydrangea macrophylla HOM05D003272 ORTHO05D003776 3.7e-134 481.5 233 100.0
Dinv16344 Davidia involucrata HOM05D003272 ORTHO05D003776 1.9e-98 362.8 270 70.0
Dinv24041 Davidia involucrata HOM05D003272 ORTHO05D003776 1.2e-97 360.1 270 68.9
CSS0044868 Camellia sinensis var. sinensis HOM05D003272 ORTHO05D003776 2.2e-94 349.4 270 68.5
Actinidia22066 Actinidia chinensis HOM05D003272 ORTHO05D003776 1.6e-92 343.2 270 65.9
vmacro22626 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 2.3e-91 339.3 272 67.6
Ciclev10010926m.g Citrus clementina HOM05D003272 ORTHO05D003776 3.9e-91 338.6 270 64.8
Potri.016G060200 Populus trichocarpa HOM05D003272 ORTHO05D003776 3.9e-91 338.6 270 66.7
Sabra16G0063100 Salix brachista HOM05D003272 ORTHO05D003776 1.1e-90 337.0 270 66.3
Cfa020144 Carpinus fangiana HOM05D003272 ORTHO05D003776 1.5e-90 336.7 270 65.9
MD14G1054100 Malus domestica HOM05D003272 ORTHO05D003776 2.5e-90 335.9 270 66.7
Rhsim03G0003200 Rhododendron simsii HOM05D003272 ORTHO05D003776 2.5e-90 335.9 279 65.6
Potri.006G194500 Populus trichocarpa HOM05D003272 ORTHO05D003776 4.3e-90 335.1 270 65.9
Peaxi162Scf00463g00423 Petunia axillaris HOM05D003272 ORTHO05D003776 5.6e-90 334.7 270 64.1
QL07p024475 Quercus lobata HOM05D003272 ORTHO05D003776 2.1e-89 332.8 270 65.6
Hund24815 Selenicereus undatus HOM05D003272 ORTHO05D003776 2.1e-89 332.8 276 64.9
Manes.09G037500 Manihot esculenta HOM05D003272 ORTHO05D003776 1.8e-88 329.7 270 66.7
Rhsim04G0095400 Rhododendron simsii HOM05D003272 ORTHO05D003776 4.0e-88 328.6 275 65.1
Nitab4.5_0002339g0030 Nicotiana tabacum HOM05D003272 ORTHO05D003776 8.9e-88 327.4 270 62.6
Atru.chr8.1154 Acer truncatum HOM05D003272 ORTHO05D003776 1.2e-87 327.0 270 65.6
CiPaw.10G025200 Carya illinoinensis HOM05D003272 ORTHO05D003776 3.4e-87 325.5 270 65.2
Sc13g0002400 Simmondsia chinensis HOM05D003272 ORTHO05D003776 3.4e-87 325.5 271 64.9
Haze_20019 Corylus avellana HOM05D003272 ORTHO05D003776 5.8e-87 324.7 260 66.9
FvH4_6g21890 Fragaria vesca HOM05D003272 ORTHO05D003776 1.7e-86 323.2 270 64.8
FAN14G3195 Fragaria x ananassa HOM05D003272 ORTHO05D003776 1.7e-86 323.2 270 64.8
RcHm_v2.0_Chr3g0479241 Rosa chinensis HOM05D003272 ORTHO05D003776 1.7e-86 323.2 270 64.4
Nn7g35964 Nelumbo nucifera HOM05D003272 ORTHO05D003776 3.7e-86 322.0 271 63.5
Actinidia38598 Actinidia chinensis HOM05D003272 ORTHO05D003776 4.9e-86 321.6 270 63.3
Cc06_g15520 Coffea canephora HOM05D003272 ORTHO05D003776 4.9e-86 321.6 278 62.9
Nitab4.5_0000009g0220 Nicotiana tabacum HOM05D003272 ORTHO05D003776 8.3e-86 320.9 270 61.5
Actinidia17288 Actinidia chinensis HOM05D003272 ORTHO05D003776 1.9e-85 319.7 270 63.7
CANSAT64G1991 Cannabis sativa HOM05D003272 ORTHO05D003776 1.9e-85 319.7 270 65.6
FAN09G3998 Fragaria x ananassa HOM05D003272 ORTHO05D003776 1.9e-85 319.7 270 64.1
AUR62015331 Chenopodium quinoa HOM05D003272 ORTHO05D003776 2.4e-85 319.3 276 63.4
TAR623G1173 Trochodendron aralioides HOM05D003272 ORTHO05D003776 3.2e-85 318.9 271 63.8
AUR62012007 Chenopodium quinoa HOM05D003272 ORTHO05D003776 5.4e-85 318.2 276 63.4
FAN05G4520 Fragaria x ananassa HOM05D003272 ORTHO05D003776 5.4e-85 318.2 270 64.1
MELO3C009057.2 Cucumis melo HOM05D003272 ORTHO05D003776 7.1e-85 317.8 270 63.0
Nitab4.5_0000358g0060 Nicotiana tabacum HOM05D003272 ORTHO05D003776 7.1e-85 317.8 271 62.0
Solyc10g079010.3 Solanum lycopersicum HOM05D003272 ORTHO05D003776 7.1e-85 317.8 270 61.5
Thecc.05G174800 Theobroma cacao HOM05D003272 ORTHO05D003776 7.1e-85 317.8 270 63.3
arahy.Tifrunner.gnm1.ann1.LQ935E Arachis hypogaea HOM05D003272 ORTHO05D003776 9.2e-85 317.4 270 61.9
arahy.Tifrunner.gnm1.ann1.VD9RJB Arachis hypogaea HOM05D003272 ORTHO05D003776 9.2e-85 317.4 270 61.9
HanXRQChr14g0438261 Helianthus annuus HOM05D003272 ORTHO05D003776 9.2e-85 317.4 270 63.3
Nn2g15739 Nelumbo nucifera HOM05D003272 ORTHO05D003776 9.2e-85 317.4 272 64.0
CsaV3_4G031310 Cucumis sativus L. HOM05D003272 ORTHO05D003776 2.1e-84 316.2 270 62.6
Lalb_Chr04g0259561 Lupinus albus HOM05D003272 ORTHO05D003776 3.5e-84 315.5 270 61.9
TPR.G30306 Trifolium pratense HOM05D003272 ORTHO05D003776 4.6e-84 315.1 270 63.0
Duzib093G2065 Durio zibethinus HOM05D003272 ORTHO05D003776 6.0e-84 314.7 270 62.6
Sed0015373 Sechium edule HOM05D003272 ORTHO05D003776 6.0e-84 314.7 270 62.2
Sopen10g029630 Solanum pennellii HOM05D003272 ORTHO05D003776 6.0e-84 314.7 270 61.1
EL10Ac3g06883 Beta vulgaris HOM05D003272 ORTHO05D003776 1.0e-83 313.9 276 63.0
ClCG04G000900 Citrullus lanatus HOM05D003272 ORTHO05D003776 1.0e-83 313.9 270 62.2
Glyma.03G146500 Glycine max HOM05D003272 ORTHO05D003776 1.0e-83 313.9 270 61.1
Lsat_1_v5_gn_1_60961 Lactuca sativa HOM05D003272 ORTHO05D003776 1.0e-83 313.9 274 62.4
DCAR_013670 Daucus carota HOM05D003272 ORTHO05D003776 1.3e-83 313.5 270 61.9
DCAR_017040 Daucus carota HOM05D003272 ORTHO05D003776 1.3e-83 313.5 270 63.0
Gohir.A04G054400 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.3e-83 313.5 270 63.0
Sabra06G0149200 Salix brachista HOM05D003272 ORTHO05D003776 1.7e-83 313.2 270 61.9
Cpa.g.sc85.47 Carica papaya HOM05D003272 ORTHO05D003776 2.3e-83 312.8 270 62.2
CAN.G960.20 Capsicum annuum HOM05D003272 ORTHO05D003776 6.6e-83 311.2 271 60.5
Glyma.19G149800 Glycine max HOM05D003272 ORTHO05D003776 6.6e-83 311.2 273 61.5
Lj1C1133T6 Lonicera japonica HOM05D003272 ORTHO05D003776 6.6e-83 311.2 274 61.7
GSVIVG01033469001 Vitis vinifera HOM05D003272 ORTHO05D003776 8.6e-83 310.8 278 61.2
FAN02G4424 Fragaria x ananassa HOM05D003272 ORTHO05D003776 1.1e-82 310.5 261 65.1
TWI74G0429 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 1.1e-82 310.5 270 62.6
Gorai.013G213300 Gossypium raimondii HOM05D003272 ORTHO05D003776 1.5e-82 310.1 270 62.2
Lalb_Chr15g0079101 Lupinus albus HOM05D003272 ORTHO05D003776 1.5e-82 310.1 270 60.4
THA.LOC104802668 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 1.5e-82 310.1 270 60.7
Gorai.002G155500 Gossypium raimondii HOM05D003272 ORTHO05D003776 2.5e-82 309.3 270 62.2
COL.COLO4_29357 Corchorus olitorius HOM05D003272 ORTHO05D003776 5.6e-82 308.1 270 61.9
TWI77G0466 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 5.6e-82 308.1 270 61.9
TWI53G1277 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 7.3e-82 307.8 270 61.5
ECA238G2479 Erigeron canadensis HOM05D003272 ORTHO05D003776 1.6e-81 306.6 248 64.9
HanXRQChr14g0443181 Helianthus annuus HOM05D003272 ORTHO05D003776 1.6e-81 306.6 245 65.3
SalBow6G0671 Salvia bowleyana HOM05D003272 ORTHO05D003776 2.8e-81 305.8 284 59.5
Prupe.7G081000 Prunus persica HOM05D003272 ORTHO05D003776 4.7e-81 305.1 176 83.5
Sed0015981 Sechium edule HOM05D003272 ORTHO05D003776 4.7e-81 305.1 246 64.6
VMungo1383G1563 Vigna mungo HOM05D003272 ORTHO05D003776 4.7e-81 305.1 270 59.6
Peaxi162Scf00003g00473 Petunia axillaris HOM05D003272 ORTHO05D003776 6.2e-81 304.7 270 58.9
PGR142G2098 Punica granatum HOM05D003272 ORTHO05D003776 6.2e-81 304.7 274 60.6
Psat0s4022g0120 Pisum sativum HOM05D003272 ORTHO05D003776 8.1e-81 304.3 270 61.1
MD12G1054800 Malus domestica HOM05D003272 ORTHO05D003776 1.4e-80 303.5 176 83.0
THA.LOC104824482 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 2.3e-80 302.8 270 60.0
VMungo0720G0611 Vigna mungo HOM05D003272 ORTHO05D003776 2.3e-80 302.8 238 65.5
Lalb_Chr18g0048041 Lupinus albus HOM05D003272 ORTHO05D003776 3.1e-80 302.4 270 59.3
Phvul.007G261300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 3.1e-80 302.4 238 64.7
AL5G39720 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 6.8e-80 301.2 270 59.6
MSTRG.6497 Avicennia marina HOM05D003272 ORTHO05D003776 8.9e-80 300.8 274 60.2
Ca_08539_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 1.2e-79 300.4 270 60.0
Gohir.A01G137100 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.0e-79 299.7 270 61.5
Phvul.001G144300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 2.0e-79 299.7 273 60.1
Lsat_1_v5_gn_2_56141 Lactuca sativa HOM05D003272 ORTHO05D003776 2.6e-79 299.3 271 62.7
AT3G58050 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 4.4e-79 298.5 270 58.1
Duzib106G0166 Durio zibethinus HOM05D003272 ORTHO05D003776 5.8e-79 298.1 273 59.3
SalBow1G7043 Salvia bowleyana HOM05D003272 ORTHO05D003776 7.6e-79 297.7 280 58.6
Gohir.D01G124900 Gossypium hirsutum HOM05D003272 ORTHO05D003776 9.9e-79 297.4 273 60.1
Aqoxy2G00092 Aquilegia oxysepala HOM05D003272 ORTHO05D003776 1.3e-78 297.0 272 59.9
Aa31LG10G12750 Aethionema arabicum HOM05D003272 ORTHO05D003776 1.7e-78 296.6 270 58.9
Glyma.09G109000 Glycine max HOM05D003272 ORTHO05D003776 2.2e-78 296.2 239 63.6
CARHR168370 Cardamine hirsuta HOM05D003272 ORTHO05D003776 3.8e-78 295.4 270 58.1
Lj1g0008912 Lotus japonicus HOM05D003272 ORTHO05D003776 3.8e-78 295.4 246 62.6
Sp5g04670 Schrenkiella parvula HOM05D003272 ORTHO05D003776 2.4e-77 292.7 270 57.8
vmacro22121 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 2.4e-77 292.7 293 57.3
Medtr1g054355 Medicago truncatula HOM05D003272 ORTHO05D003776 3.2e-77 292.4 239 64.0
Eucgr.K01852 Eucalyptus grandis HOM05D003272 ORTHO05D003776 5.4e-77 291.6 270 58.9
Ah.04g152770 Amaranthus hybridus HOM05D003272 ORTHO05D003776 2.1e-76 289.7 177 79.7
Psat3g067560 Pisum sativum HOM05D003272 ORTHO05D003776 3.5e-76 288.9 260 58.8
MSTRG.19926 Avicennia marina HOM05D003272 ORTHO05D003776 4.6e-76 288.5 278 57.6
Ca_12036_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 1.0e-75 287.3 266 62.0
MBI19_g17426_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 1.7e-75 286.6 271 58.7
SGA_v2.0_scaffold69G23041 Striga asiatica HOM05D003272 ORTHO05D003776 5.1e-75 285.0 284 55.6
ECA248G2064 Erigeron canadensis HOM05D003272 ORTHO05D003776 7.3e-74 281.2 245 61.6
Medtr7g093630 Medicago truncatula HOM05D003272 ORTHO05D003776 3.6e-73 278.9 270 57.0
ATR0598G091 Amborella trichopoda HOM05D003272 ORTHO05D003776 6.2e-73 278.1 271 57.2
TPR.G13362 Trifolium pratense HOM05D003272 ORTHO05D003776 6.2e-73 278.1 270 56.3
Lj2C363G5 Lonicera japonica HOM05D003272 ORTHO05D003776 8.1e-73 277.7 167 80.8
MBI13_g29652_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 2.4e-72 276.2 270 55.2
Ca_12034_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 3.1e-72 275.8 179 77.7
Migut.J01867 Erythranthe guttata HOM05D003272 ORTHO05D003776 2.9e-70 269.2 282 52.8
Thhalv10016156m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 1.1e-69 267.3 270 52.6
Lj5g0000225 Lotus japonicus HOM05D003272 ORTHO05D003776 4.2e-69 265.4 254 57.5
Gohir.D01G133800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 4.6e-68 261.9 167 77.8
Sp4g24230 Schrenkiella parvula HOM05D003272 ORTHO05D003776 6.0e-68 261.5 238 57.1
Gorai.002G165500 Gossypium raimondii HOM05D003272 ORTHO05D003776 7.8e-68 261.2 167 77.2
PSO384G2805 Papaver somniferum HOM05D003272 ORTHO05D003776 1.9e-66 256.5 277 52.0
Thhalv10016161m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 5.6e-66 255.0 176 68.8
PSO339G1267 Papaver somniferum HOM05D003272 ORTHO05D003776 7.3e-66 254.6 277 51.6
Aa31LG1G24170 Aethionema arabicum HOM05D003272 ORTHO05D003776 1.3e-65 253.8 273 51.3
CDE06G2439 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 9.0e-64 247.7 228 60.1
SEGI_10284 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 2.0e-63 246.5 274 50.4
CARHR137060 Cardamine hirsuta HOM05D003272 ORTHO05D003776 3.4e-63 245.7 176 67.0
SHI31755 Sapria himalayana HOM05D003272 ORTHO05D003776 3.4e-63 245.7 167 74.9
Oeu046727.1 Olea europaea HOM05D003272 ORTHO05D003776 4.5e-63 245.4 273 53.8
Zm00001eb009880 Zea mays HOM05D003272 ORTHO05D003776 4.5e-63 245.4 243 54.3
CiPaw.09G028500 Carya illinoinensis HOM05D003272 ORTHO05D003776 9.9e-63 244.2 133 85.7
Zm00001eb399270 Zea mays HOM05D003272 ORTHO05D003776 8.4e-62 241.1 244 52.9
Zm00001eb025760 Zea mays HOM05D003272 ORTHO05D003776 1.0e-59 234.2 176 65.9
AL4G40320 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 5.1e-59 231.9 266 48.1
Mapoly0087s0049 Marchantia polymorpha HOM05D003272 ORTHO05D003776 5.3e-56 221.9 186 62.9
SMO137G0342 Selaginella moellendorffii HOM05D003272 ORTHO05D003776 9.0e-56 221.1 181 62.4
Carub.0004s2429 Capsella rubella HOM05D003272 ORTHO05D003776 1.5e-55 220.3 258 48.4
AT2G41960 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 2.4e-53 213.0 140 70.0
Pp3c16_15960 Physcomitrium patens HOM05D003272 ORTHO05D003776 2.4e-53 213.0 179 61.5
unitig_0.g524 Utricularia gibba HOM05D003272 ORTHO05D003776 4.2e-53 212.2 259 48.6
Pp3c6_26480 Physcomitrium patens HOM05D003272 ORTHO05D003776 2.7e-52 209.5 176 60.8
Ah.13g075660 Amaranthus hybridus HOM05D003272 ORTHO05D003776 1.3e-51 207.2 167 66.5
BcaB01g03430 Brassica carinata HOM05D003272 ORTHO05D003776 6.7e-51 204.9 271 48.0
AagrBONN_evm.TU.Sc2ySwM_344.2034 Anthoceros agrestis HOM05D003272 ORTHO05D003776 1.5e-50 203.8 154 64.9
Os10g0105400 Oryza sativa ssp. japonica HOM05D003272 ORTHO05D003776 1.3e-49 200.7 207 51.2
A03p23500 Brassica napus HOM05D003272 ORTHO05D003776 1.6e-49 200.3 275 44.7
BraA03t11566Z Brassica rapa HOM05D003272 ORTHO05D003776 1.6e-49 200.3 275 44.7
BolC3t15173H Brassica oleracea HOM05D003272 ORTHO05D003776 3.7e-49 199.1 274 44.9
C03p28030 Brassica napus HOM05D003272 ORTHO05D003776 4.0e-48 195.7 266 45.9
BcaC01g05316 Brassica carinata HOM05D003272 ORTHO05D003776 6.9e-48 194.9 271 44.3
Gohir.D04G097200 Gossypium hirsutum HOM05D003272 ORTHO05D003776 6.9e-48 194.9 226 51.8
A05p02670 Brassica napus HOM05D003272 ORTHO05D003776 4.2e-45 185.7 218 49.1
A05p02660 Brassica napus HOM05D003272 ORTHO05D003776 5.5e-45 185.3 216 50.0
C04p03190 Brassica napus HOM05D003272 ORTHO05D003776 1.6e-44 183.7 218 48.6
DCAR_019863 Daucus carota HOM05D003272 ORTHO05D003776 1.6e-44 183.7 219 48.4
BcaC02g12452 Brassica carinata HOM05D003272 ORTHO05D003776 1.0e-43 181.0 218 48.2
BcaC02g12450 Brassica carinata HOM05D003272 ORTHO05D003776 1.8e-43 180.3 133 66.9
C04p03170 Brassica napus HOM05D003272 ORTHO05D003776 1.8e-43 180.3 133 66.9
BraA05t19259Z Brassica rapa HOM05D003272 ORTHO05D003776 1.8e-43 180.3 221 48.4
BolC4t21957H Brassica oleracea HOM05D003272 ORTHO05D003776 5.7e-42 175.3 212 48.6
Zm00001eb224410 Zea mays HOM05D003272 ORTHO05D003776 1.6e-41 173.7 109 75.2
Gorai.006G143700 Gossypium raimondii HOM05D003272 ORTHO05D003776 2.0e-39 166.8 92 83.7
Gohir.D09G124800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.7e-38 163.7 92 82.6
DCAR_019865 Daucus carota HOM05D003272 ORTHO05D003776 2.8e-33 146.4 147 51.0
Gohir.A09G128750 Gossypium hirsutum HOM05D003272 ORTHO05D003776 3.7e-33 146.0 104 72.1
DCAR_019864 Daucus carota HOM05D003272 ORTHO05D003776 5.9e-31 138.7 132 55.3
CDE07G0242 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 1.7e-30 137.1 176 46.0
Nn3g17087 Nelumbo nucifera HOM05D003272 ORTHO05D003776 3.5e-15 86.3 80 56.2
HPP92_020307 Vanilla planifolia HOM05D003272 ORTHO05D003776 8.0e-12 75.1 167 36.5
TAR369G0389 Trochodendron aralioides HOM05D003272 ORTHO05D003776 1.0e-06 58.2 125 39.2


User provided reference genes

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