Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.2e-220 767.7 384 100.0
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 6.0e-174 614.4 384 81.0
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 4.6e-166 588.2 388 78.1
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.3e-165 585.9 392 78.1
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.3e-160 570.1 376 78.7
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.4e-159 566.6 378 78.3
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.1e-158 562.8 366 77.6
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 2.7e-158 562.4 387 75.2
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 6.0e-158 561.2 382 75.4
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 7.9e-158 560.8 387 74.2
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 7.9e-158 560.8 386 74.4
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.3e-157 560.1 392 73.5
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 6.7e-157 557.8 385 75.1
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 8.7e-157 557.4 388 75.0
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.5e-156 555.8 386 75.4
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 5.7e-156 554.7 387 73.6
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 7.4e-156 554.3 384 75.5
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 1.3e-155 553.5 356 77.0
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.3e-155 553.5 376 74.7
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 6.9e-154 547.7 379 73.9
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 9.0e-154 547.4 369 75.3
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 2.0e-153 546.2 387 73.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 2.6e-153 545.8 395 71.9
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 3.4e-153 545.4 384 73.2
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 4.5e-153 545.0 324 83.3
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 7.6e-153 544.3 358 77.1
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.0e-152 543.9 381 72.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 2.2e-152 542.7 342 78.7
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 3.8e-152 542.0 395 71.6
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 5.0e-152 541.6 368 73.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 6.5e-152 541.2 372 74.2
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 8.4e-152 540.8 348 76.7
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.9e-151 539.7 360 74.7
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.9e-151 539.7 368 73.4
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.9e-151 539.7 344 76.5
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.9e-151 539.7 388 71.6
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 3.2e-151 538.9 324 82.1
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 3.2e-151 538.9 382 72.5
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 3.2e-151 538.9 324 82.1
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 3.2e-151 538.9 388 72.2
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 4.2e-151 538.5 336 78.3
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 7.2e-151 537.7 377 70.8
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 9.3e-151 537.3 394 71.3
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 9.3e-151 537.3 368 73.4
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.2e-150 537.0 336 78.3
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.2e-150 537.0 385 71.7
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.6e-150 536.6 390 72.1
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.1e-150 536.2 387 71.8
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 2.7e-150 535.8 322 81.4
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 2.7e-150 535.8 321 82.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 2.7e-150 535.8 317 83.0
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 2.7e-150 535.8 317 83.0
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 3.5e-150 535.4 359 75.2
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 4.6e-150 535.0 359 74.9
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 4.6e-150 535.0 322 81.4
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 4.6e-150 535.0 391 69.3
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 6.1e-150 534.6 388 71.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.0e-149 533.9 362 74.3
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.0e-149 533.9 384 71.1
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 2.3e-149 532.7 321 79.8
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 3.9e-149 531.9 324 79.6
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 3.9e-149 531.9 385 71.2
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 6.7e-149 531.2 368 72.0
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 8.7e-149 530.8 380 73.2
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 5.7e-148 528.1 390 70.8
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 9.7e-148 527.3 322 80.4
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.3e-147 526.9 344 75.6
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 2.2e-147 526.2 386 71.5
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 2.8e-147 525.8 361 70.1
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 6.3e-147 524.6 390 70.5
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 8.2e-147 524.2 387 69.3
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.1e-146 523.9 387 69.8
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.4e-146 523.5 374 70.6
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 4.5e-145 518.5 365 74.0
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.3e-144 516.9 392 67.1
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 2.9e-144 515.8 392 67.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 5.0e-144 515.0 366 71.9
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 8.5e-144 514.2 396 68.9
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.1e-143 513.8 394 67.0
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.8e-141 506.5 353 72.0
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 2.5e-140 502.7 322 75.2
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 6.9e-138 494.6 328 72.9
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 5.0e-136 488.4 277 85.9
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 1.8e-133 479.9 386 66.3
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.8e-131 472.6 286 81.8
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 2.9e-128 462.6 277 80.1
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 3.2e-127 459.1 269 82.5
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 2.6e-124 449.5 391 64.2
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-120 437.2 268 79.1
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 1.3e-120 437.2 259 81.5
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.8e-117 426.8 307 72.6
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.3e-112 410.6 269 71.7
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 1.7e-112 410.2 319 61.4
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 7.2e-111 404.8 315 60.3
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 3.0e-109 399.4 328 59.5
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.3e-104 384.0 387 51.4
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 7.3e-103 378.3 273 69.2
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 6.1e-102 375.2 298 67.4
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 2.3e-101 373.2 268 70.1
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.2e-98 362.8 289 69.6
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 5.4e-98 362.1 291 66.0
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.7e-89 333.2 227 73.1
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.6e-81 307.4 271 64.6
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-74 284.6 332 49.7
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 9.2e-74 281.6 166 88.6
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 9.6e-71 271.6 316 44.3
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 9.6e-71 271.6 316 44.3
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.4e-69 267.7 190 71.1
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.2e-68 264.6 155 81.9
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 6.4e-67 258.8 312 43.6
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 1.1e-66 258.1 335 42.4
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 8.7e-64 248.4 215 60.9
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 8.4e-59 231.9 130 83.8
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 8.5e-35 152.1 394 30.5
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.2e-33 148.3 92 79.3
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-32 143.3 100 64.0
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-30 138.3 79 83.5
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.4e-29 134.8 85 70.6
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.1e-25 119.4 91 64.8
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 4.8e-22 109.8 79 64.6
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 6.9e-21 105.9 54 98.1
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.1e-18 98.6 111 54.1
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 3.2e-18 97.1 74 67.6
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 3.6e-17 93.6 106 50.9
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.4e-16 91.7 75 64.0
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.4e-16 91.7 75 64.0
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.1e-15 88.6 59 78.0
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 3.7e-14 83.6 47 85.1
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 3.1e-13 80.5 95 50.5
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 7.0e-13 79.3 122 44.3
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 2.2e-11 74.3 106 50.0
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 5.0e-11 73.2 75 52.0
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.5e-10 71.6 293 25.9
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 3.2e-10 70.5 106 45.3
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 9.4e-10 68.9 40 82.5
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.7e-09 67.4 300 25.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.8e-08 64.7 305 24.9
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 4.0e-08 63.5 80 46.2
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 6.7e-08 62.8 75 46.7
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 8.8e-08 62.4 298 24.2
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 8.8e-08 62.4 293 23.9
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 3.3e-07 60.5 304 24.7
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 4.4e-07 60.1 42 66.7
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 5.7e-07 59.7 287 23.7
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 5.7e-07 59.7 278 24.5
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 7.5e-07 59.3 285 24.6
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 9.7e-07 58.9 285 23.5
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.3e-06 58.5 300 22.3
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.3e-06 58.5 278 25.9
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 2.8e-06 57.4 284 23.9
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 2.8e-06 57.4 285 23.2


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