Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.7e-84 315.8 150 100.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 8.1e-66 253.8 149 79.2
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.7e-63 246.1 146 78.8
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.9e-62 242.7 148 75.7
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.1e-61 239.2 148 75.0
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.1e-61 239.2 148 75.0
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.7e-61 238.8 150 73.3
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.0e-61 237.7 145 75.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 7.8e-61 237.3 139 78.4
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 7.8e-61 237.3 149 75.2
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.3e-60 236.5 148 74.3
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.7e-60 236.1 149 70.5
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.3e-60 235.7 150 73.3
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 3.0e-60 235.3 148 73.0
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.5e-59 233.0 146 74.0
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.5e-59 232.3 146 72.6
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.3e-59 231.9 146 74.7
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 5.6e-59 231.1 146 74.0
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.6e-58 229.6 152 68.4
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.6e-58 228.4 141 74.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.7e-58 228.0 148 69.6
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 6.2e-58 227.6 144 72.2
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 4.0e-57 224.9 147 71.4
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 4.0e-57 224.9 148 70.3
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 6.8e-57 224.2 145 69.7
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.5e-56 223.0 144 69.4
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 2.0e-56 222.6 144 72.9
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 3.4e-56 221.9 144 72.9
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 9.9e-56 220.3 151 70.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.3e-55 219.9 137 74.5
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.3e-55 219.9 143 72.0
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.7e-55 219.5 150 67.3
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 2.2e-55 219.2 142 71.1
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.9e-54 216.1 151 68.9
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 2.4e-54 215.7 146 66.4
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 3.2e-54 215.3 146 67.1
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.2e-53 213.4 141 72.3
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.2e-53 213.4 138 71.0
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.2e-53 213.4 146 67.1
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.7e-53 212.2 148 66.9
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 6.0e-53 211.1 150 67.3
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.0e-52 210.3 141 69.5
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.0e-52 210.3 147 66.0
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.3e-52 209.9 146 66.4
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.3e-52 209.9 143 66.4
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.0e-52 208.8 150 66.7
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.0e-52 208.8 155 63.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.1e-51 206.8 135 67.4
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.1e-51 206.8 151 66.2
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.5e-51 206.5 138 67.4
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.5e-51 206.5 138 67.4
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.5e-51 206.5 140 67.9
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.9e-51 206.1 150 64.7
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 3.3e-51 205.3 150 64.0
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 3.3e-51 205.3 142 68.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 4.3e-51 204.9 143 66.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 4.3e-51 204.9 141 68.1
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.3e-51 204.1 138 66.7
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 9.6e-51 203.8 146 68.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 2.1e-50 202.6 141 68.1
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 4.7e-50 201.4 139 66.9
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 6.2e-50 201.1 137 66.4
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 6.2e-50 201.1 149 62.4
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 8.1e-50 200.7 137 64.2
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 8.1e-50 200.7 145 64.1
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.4e-49 199.9 136 66.2
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.4e-49 199.9 136 66.2
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.8e-49 199.5 139 65.5
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.8e-49 199.5 147 61.9
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 3.1e-49 198.7 141 66.7
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.0e-49 198.4 132 68.2
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 4.0e-49 198.4 143 62.9
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 4.0e-49 198.4 132 70.5
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 5.2e-49 198.0 138 65.2
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 5.2e-49 198.0 138 65.2
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 5.2e-49 198.0 138 65.2
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 9.0e-49 197.2 132 67.4
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-48 196.8 134 67.2
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.2e-48 196.8 134 67.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.2e-48 196.8 132 67.4
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.5e-48 196.4 121 75.2
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 7.6e-48 194.1 147 60.5
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 9.9e-48 193.7 142 62.7
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.3e-47 193.4 148 62.8
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.2e-47 192.6 141 65.2
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.8e-47 191.8 127 68.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.8e-47 191.8 127 68.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.8e-47 191.8 127 68.5
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 3.8e-47 191.8 132 65.2
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.4e-47 190.7 132 68.9
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.1e-46 190.3 132 67.4
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 4.2e-46 188.3 156 57.1
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.4e-46 188.0 132 66.7
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.4e-46 188.0 131 67.2
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 7.1e-46 187.6 151 57.0
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.2e-45 186.8 128 67.2
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.2e-45 186.8 147 61.9
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 4.6e-45 184.9 214 48.1
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 6.0e-45 184.5 146 54.8
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 6.0e-45 184.5 122 68.9
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 6.0e-45 184.5 150 58.0
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.7e-44 183.0 131 61.8
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.3e-44 182.6 146 54.1
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.3e-44 182.6 131 63.4
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 3.9e-44 181.8 134 59.7
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 8.7e-44 180.6 145 57.9
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.3e-43 178.7 131 61.1
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.3e-42 176.8 146 57.5
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.6e-42 176.4 134 63.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 8.1e-42 174.1 127 62.2
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.4e-41 173.3 145 53.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.2e-40 170.2 144 56.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.2e-39 166.0 121 62.0
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 8.4e-39 164.1 217 42.4
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-38 163.3 135 57.0
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 8.7e-36 154.1 112 62.5
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 5.6e-35 151.4 130 54.6
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 6.9e-33 144.4 136 47.1
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 9.0e-33 144.1 135 46.7
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.2e-32 143.7 134 47.8
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 3.4e-32 142.1 121 52.9
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 7.6e-32 141.0 121 53.7
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-31 140.2 121 52.1
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.2e-31 139.4 147 44.9
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 8.4e-31 137.5 80 77.5
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.2e-29 133.7 150 48.0
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 6.0e-29 131.3 107 54.2
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.8e-28 129.8 102 61.8
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.8e-26 122.5 95 57.9
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.1e-25 120.6 82 68.3
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.4e-25 120.2 162 40.7
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.4e-25 119.4 98 63.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.4e-25 119.4 60 90.0
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.0e-25 117.5 60 88.3
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.9e-23 112.5 97 55.7
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 9.3e-22 107.5 139 37.4
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 5.7e-19 98.2 89 52.8
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.2e-18 96.3 137 36.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.7e-18 95.5 137 35.8
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 3.1e-17 92.4 149 34.2
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 2.0e-16 89.7 72 56.9
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 2.6e-16 89.4 135 32.6
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 1.8e-12 76.6 57 63.2
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 8.2e-10 67.8 104 32.7
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 8.5e-07 57.8 36 72.2
Ah.09g226670 Amaranthus hybridus HOM05D005008 ORTHO05D006092 9.4e-06 54.3 33 75.8


User provided reference genes

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