Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.6e-155 550.4 273 100.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.6e-112 408.7 279 73.8
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.3e-110 402.1 279 74.6
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.4e-108 396.0 279 73.8
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.8e-103 379.8 257 76.3
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 5.5e-97 358.2 281 66.5
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.0e-95 354.0 279 67.0
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.1e-92 342.4 331 58.3
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 5.3e-92 341.7 317 58.7
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.0e-92 341.3 377 52.0
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.8e-90 335.5 288 60.8
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 8.5e-90 334.3 291 60.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 2.5e-89 332.8 287 59.6
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 2.5e-89 332.8 286 60.8
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.2e-88 330.5 287 60.6
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 8.0e-88 327.8 286 59.8
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.0e-87 327.4 286 60.1
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.8e-87 326.6 281 61.6
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 2.3e-87 326.2 287 59.9
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.0e-87 325.9 282 59.9
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 6.8e-87 324.7 282 61.3
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.6e-86 322.8 392 49.5
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.6e-86 322.8 282 61.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 4.4e-86 322.0 280 60.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 4.1e-84 315.5 280 58.6
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.3e-82 310.5 288 62.2
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.7e-82 310.1 281 58.7
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.7e-82 310.1 281 58.7
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.5e-81 307.0 285 57.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.1e-80 303.1 287 58.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.0e-79 299.3 282 59.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.4e-78 295.8 280 58.6
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.3e-77 293.9 204 72.1
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.6e-75 287.0 282 56.4
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.6e-75 287.0 280 57.1
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.0e-75 286.6 292 54.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 3.5e-75 285.8 288 55.6
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.0e-74 284.3 284 54.9
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-74 283.9 281 57.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.9e-74 282.7 255 58.8
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.9e-74 282.7 293 54.9
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.3e-73 279.3 274 56.2
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.3e-73 278.9 290 58.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 5.6e-73 278.5 258 58.1
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 9.5e-73 277.7 282 54.6
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.2e-72 277.3 279 54.5
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-72 277.3 258 58.1
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.1e-72 276.6 282 54.6
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-71 274.2 258 57.4
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.4e-71 273.9 262 58.0
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.8e-71 273.5 281 53.7
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.0e-71 272.3 284 55.3
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 6.8e-71 271.6 226 64.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.5e-70 270.4 283 53.0
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 5.8e-70 268.5 280 52.9
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.1e-68 262.3 283 54.1
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 9.2e-68 261.2 283 53.7
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.3e-66 256.5 289 50.9
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.1e-65 254.2 240 59.6
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.5e-65 253.8 200 64.0
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.1e-64 250.0 313 47.0
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.1e-64 250.0 313 47.0
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 8.0e-64 248.1 239 58.6
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.3e-63 246.5 234 59.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.8e-63 245.0 284 50.0
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 6.8e-63 245.0 196 65.3
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-62 244.2 169 73.4
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 5.8e-62 241.9 208 61.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 7.5e-62 241.5 282 54.6
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 9.8e-62 241.1 293 49.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.7e-61 240.4 220 59.1
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.5e-59 232.6 286 48.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.5e-57 227.3 258 50.8
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.6e-56 223.8 282 46.1
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 6.2e-56 221.9 292 44.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 3.1e-55 219.5 287 47.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 6.8e-55 218.4 290 46.2
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.5e-54 217.2 227 54.2
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 2.6e-54 216.5 293 46.4
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 2.6e-54 216.5 293 46.4
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 3.4e-54 216.1 290 45.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.5e-54 214.9 280 46.1
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.9e-54 214.5 117 91.5
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.3e-53 214.2 226 51.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.7e-53 213.8 296 46.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.7e-53 212.6 290 45.5
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.9e-53 212.2 278 46.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 8.3e-53 211.5 285 45.3
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.2e-52 209.5 282 46.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.2e-52 209.5 250 48.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 1.0e-50 204.5 293 44.4
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.3e-50 203.4 319 43.6
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.0e-50 203.0 219 51.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 3.9e-50 202.6 311 45.3
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 5.1e-50 202.2 234 51.7
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.1e-49 201.1 302 43.4
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.9e-49 200.3 269 45.4
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.9e-49 200.3 271 44.3
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 7.3e-49 198.4 206 51.5
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 4.7e-48 195.7 320 42.5
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 8.1e-48 194.9 281 40.2
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 6.8e-47 191.8 349 38.4
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.5e-46 190.7 179 60.3
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.6e-46 189.9 293 42.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.9e-44 183.7 279 41.6
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 5.4e-44 182.2 252 42.5
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.7e-43 179.9 249 44.2
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.5e-43 179.5 294 41.2
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 7.8e-43 178.3 300 40.3
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.0e-42 177.9 372 34.7
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 5.1e-42 175.6 250 44.0
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 6.6e-42 175.3 165 57.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 3.3e-41 172.9 294 40.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.1e-40 170.2 282 41.1
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.6e-38 163.3 297 38.4
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.1e-36 157.9 206 45.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.1e-36 157.9 144 58.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.4e-36 157.5 314 36.9
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.4e-36 156.8 274 38.3
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.6e-35 152.5 279 38.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.7e-34 150.6 292 36.3
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-33 147.9 293 35.8
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 7.3e-33 145.2 162 50.6
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.5e-30 136.0 280 35.7
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 9.9e-30 134.8 323 35.0
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.7e-29 134.0 315 30.8
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.7e-29 134.0 294 36.7
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.8e-26 124.0 235 37.4
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.5e-25 120.2 83 73.5
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 5.6e-25 119.0 207 39.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 5.6e-25 119.0 213 37.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 7.4e-25 118.6 247 39.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.7e-24 116.3 247 39.3
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.3e-23 112.5 169 41.4
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 9.0e-23 111.7 259 35.1
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.6e-19 100.9 215 35.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.5e-19 99.8 312 30.8
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.5e-19 99.8 313 30.0
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 2.3e-18 97.1 129 46.5
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 3.7e-16 89.7 97 49.5
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 9.3e-12 75.1 108 39.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.6e-11 74.3 111 45.0
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-10 71.2 54 59.3
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 8.7e-10 68.6 82 48.8
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 8.2e-08 62.0 69 43.5
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 2.0e-06 57.4 88 37.5
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 2.6e-06 57.0 141 30.5


User provided reference genes

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