Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.3e-303 1044.3 545 100.0
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.1e-203 711.4 525 74.5
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.7e-196 689.1 513 73.9
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 5.0e-150 535.4 519 58.8
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 4.0e-139 499.2 543 53.4
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.5e-138 497.3 569 52.2
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 2.4e-131 473.4 519 52.4
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 9.2e-128 461.5 519 52.2
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 5.1e-126 455.7 515 52.4
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 6.9e-123 445.3 519 49.7
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 1.2e-122 444.5 506 50.8
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 1.5e-122 444.1 535 49.0
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 2.0e-122 443.7 513 50.7
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 1.7e-121 440.7 541 48.2
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 3.8e-121 439.5 541 49.0
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.9e-121 439.1 541 48.1
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 8.4e-121 438.3 542 48.5
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 1.4e-120 437.6 519 48.7
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 1.9e-120 437.2 538 50.2
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 2.4e-120 436.8 537 49.2
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.2e-120 436.4 541 48.1
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 5.4e-120 435.6 519 48.9
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 1.2e-119 434.5 515 49.1
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.1e-119 433.7 541 48.2
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 2.1e-119 433.7 535 47.9
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 3.5e-119 433.0 519 48.6
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.6e-119 432.6 518 48.8
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.6e-119 432.6 518 48.8
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 6.0e-119 432.2 537 48.0
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 5.1e-118 429.1 540 47.0
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 1.5e-117 427.6 518 48.3
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 2.5e-117 426.8 542 47.4
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 1.6e-116 424.1 520 47.7
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 2.8e-116 423.3 543 46.6
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 4.8e-116 422.5 526 48.1
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 1.8e-115 420.6 514 49.6
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 2.0e-114 417.2 504 50.2
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 2.0e-114 417.2 514 49.6
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.3e-113 414.5 512 48.4
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 4.9e-113 412.5 542 45.6
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 4.9e-113 412.5 512 48.2
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 6.4e-113 412.1 519 47.2
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 1.1e-112 411.4 512 49.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 1.1e-112 411.4 529 46.9
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 2.4e-112 410.2 517 47.0
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 3.2e-112 409.8 512 47.3
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 5.4e-112 409.1 519 47.2
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 9.3e-112 408.3 515 48.7
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 2.7e-111 406.8 520 47.3
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 2.7e-111 406.8 516 46.1
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.0e-110 403.3 516 47.3
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 3.0e-110 403.3 540 46.1
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 3.0e-110 403.3 512 47.1
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 3.9e-110 402.9 504 47.0
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 5.1e-110 402.5 515 46.2
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 5.1e-110 402.5 540 45.4
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 8.7e-110 401.7 517 47.2
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 8.7e-110 401.7 537 45.1
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 1.1e-109 401.4 503 46.9
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 1.5e-109 401.0 515 46.2
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 1.9e-109 400.6 522 46.9
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 5.6e-109 399.1 544 43.9
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 2.1e-108 397.1 562 42.7
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 2.8e-108 396.7 503 46.5
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 3.7e-108 396.4 523 45.3
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 4.8e-108 396.0 513 47.0
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 6.2e-108 395.6 513 45.6
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 6.2e-108 395.6 539 45.6
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.1e-107 394.8 517 44.1
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 1.4e-107 394.4 544 45.2
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 1.4e-107 394.4 549 44.1
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 3.1e-107 393.3 539 44.9
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 2.6e-106 390.2 541 45.5
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 3.4e-106 389.8 549 45.0
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 8.4e-105 385.2 558 44.1
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 8.4e-105 385.2 516 45.5
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 1.4e-104 384.4 519 45.1
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 3.2e-104 383.3 564 44.3
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 2.1e-103 380.6 556 44.1
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 1.0e-102 378.3 564 43.6
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 1.0e-102 378.3 564 43.6
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 3.0e-102 376.7 565 43.7
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 3.0e-102 376.7 563 43.2
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 6.7e-102 375.6 516 45.2
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 7.4e-101 372.1 564 43.3
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.3e-97 361.3 335 57.6
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 3.2e-96 356.7 563 42.6
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 1.6e-92 344.4 518 43.4
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 4.8e-92 342.8 510 42.9
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 2.9e-89 333.6 503 41.7
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 2.5e-85 320.5 394 48.0
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 2.0e-77 294.3 541 38.1
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 5.3e-75 286.2 514 37.4
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.5e-74 283.5 334 48.5
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 1.1e-69 268.5 292 53.8
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.3e-68 265.0 346 45.1
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 9.1e-67 258.8 494 39.1
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.2e-66 258.5 399 44.1
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 3.8e-65 253.4 520 33.1
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 7.0e-59 232.6 278 48.2
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.0e-54 218.8 400 36.2
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.3e-49 201.8 408 32.6
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.6e-47 194.9 421 32.1
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.9e-35 154.8 501 27.7
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 8.9e-30 136.0 342 33.0
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.9e-24 118.2 230 36.1
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.1e-19 102.4 123 46.3
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 7.3e-16 89.7 58 74.1
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.1e-14 85.9 260 27.3
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 2.6e-13 81.3 179 36.3
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 7.6e-13 79.7 181 34.8
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 2.9e-12 77.8 82 50.0
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 6.4e-12 76.6 158 38.0
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.9e-11 75.1 174 31.6
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 2.7e-10 71.2 56 58.9
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 5.1e-09 67.0 287 24.0


User provided reference genes

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