Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.0e-47 193.0 92 100.0
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.1e-47 190.7 92 98.9
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.1e-47 190.7 92 98.9
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.1e-47 190.7 92 98.9
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.1e-47 190.7 92 98.9
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 2.7e-40 168.3 92 84.8
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 3.6e-40 167.9 92 84.8
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.0e-39 166.4 92 84.8
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 3.9e-39 164.5 92 82.6
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 2.0e-38 162.2 92 81.5
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 4.4e-38 161.0 92 81.5
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 7.4e-38 160.2 92 81.5
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 9.7e-38 159.8 92 80.4
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 9.7e-38 159.8 92 80.4
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 1.7e-37 159.1 92 77.2
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 2.2e-37 158.7 92 78.3
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 2.2e-37 158.7 92 78.3
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 2.2e-37 158.7 94 80.9
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 2.2e-37 158.7 92 79.3
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.2e-37 158.7 92 79.3
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 2.8e-37 158.3 92 77.2
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 2.8e-37 158.3 91 78.0
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 3.7e-37 157.9 92 80.4
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 3.7e-37 157.9 93 81.7
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 4.8e-37 157.5 92 78.3
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 4.8e-37 157.5 92 77.2
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 4.8e-37 157.5 92 78.3
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 6.3e-37 157.1 92 76.1
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 6.3e-37 157.1 92 79.3
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.3e-37 157.1 92 79.3
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.3e-37 157.1 92 79.3
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.3e-37 157.1 92 79.3
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.3e-37 157.1 92 79.3
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 8.2e-37 156.8 93 80.6
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 8.2e-37 156.8 93 80.6
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 8.2e-37 156.8 93 81.7
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 8.2e-37 156.8 93 78.5
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 8.2e-37 156.8 92 80.4
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 8.2e-37 156.8 92 78.3
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 1.1e-36 156.4 92 76.1
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 1.1e-36 156.4 92 79.3
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 1.4e-36 156.0 92 77.2
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 1.8e-36 155.6 89 78.7
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 1.8e-36 155.6 92 80.4
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.8e-36 155.6 92 77.2
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 3.1e-36 154.8 92 77.2
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 4.1e-36 154.5 92 78.3
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 9.1e-36 153.3 92 75.0
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 2.6e-35 151.8 92 73.9
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 4.5e-35 151.0 92 75.0
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 4.5e-35 151.0 92 76.1
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 4.5e-35 151.0 92 73.9
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 7.7e-35 150.2 92 73.9
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 1.3e-34 149.4 92 73.9
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 1.3e-34 149.4 92 72.8
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 2.2e-34 148.7 92 76.1
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 3.8e-34 147.9 91 72.5
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 3.2e-33 144.8 92 71.7
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 4.2e-33 144.4 91 72.5
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 7.2e-33 143.7 92 71.7
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 7.2e-33 143.7 92 72.8
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 9.4e-33 143.3 92 70.7
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 9.4e-33 143.3 131 58.0
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 9.4e-33 143.3 92 72.8
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 9.4e-33 143.3 92 72.8
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 9.4e-33 143.3 91 69.2
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 6.1e-32 140.6 92 70.7
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 8.0e-32 140.2 92 71.7
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 1.8e-31 139.0 92 71.7
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 2.3e-31 138.7 93 68.8
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.3e-31 138.7 92 70.7
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.3e-31 138.7 92 69.6
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 2.3e-31 138.7 92 69.6
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 3.0e-31 138.3 92 68.5
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 3.0e-31 138.3 92 68.5
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 4.0e-31 137.9 92 67.4
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 5.2e-31 137.5 92 67.4
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 5.2e-31 137.5 92 67.4
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 8.8e-31 136.7 92 67.4
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 8.8e-31 136.7 89 71.9
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 1.2e-30 136.3 92 67.4
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 1.5e-30 136.0 92 66.3
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 1.5e-30 136.0 92 68.5
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 3.3e-30 134.8 92 64.1
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 4.4e-30 134.4 92 65.2
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 7.5e-30 133.7 92 64.1
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 3.7e-29 131.3 92 64.1
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 4.8e-29 131.0 92 62.0
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 4.8e-29 131.0 92 62.0
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 1.1e-28 129.8 92 64.1
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.8e-28 129.0 92 63.0
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 1.8e-28 129.0 92 63.0
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 1.8e-28 129.0 92 62.0
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 2.4e-28 128.6 95 63.2
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 2.0e-27 125.6 92 63.0
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 2.7e-27 125.2 92 62.0
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 4.5e-27 124.4 92 62.0
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 3.8e-26 121.3 90 66.7
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 8.5e-26 120.2 92 60.9
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 1.2e-24 116.3 92 58.7
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 1.2e-22 109.8 85 61.2
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.1e-20 103.2 92 50.0
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 5.4e-20 100.9 94 51.1
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 1.2e-19 99.8 81 56.8
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 1.0e-18 96.7 69 63.8
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.7e-18 95.9 62 71.0
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 5.0e-18 94.4 62 72.6
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 2.5e-17 92.0 92 46.7
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 3.2e-17 91.7 91 44.0
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 1.8e-12 75.9 59 57.6
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 4.5e-11 71.2 57 57.9
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 1.3e-10 69.7 32 84.4
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 9.5e-09 63.5 46 65.2
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 9.5e-09 63.5 32 78.1
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.1e-08 62.4 32 81.2
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 5.2e-07 57.8 96 31.2
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 2.6e-06 55.5 111 33.3


User provided reference genes

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