Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 0.0e+00 2257.6 1105 100.0
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 0.0e+00 1399.8 1110 63.4
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 0.0e+00 1364.4 1111 62.1
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 0.0e+00 1267.3 1141 57.9
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 0.0e+00 1192.9 1065 57.8
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 0.0e+00 1147.9 1117 53.3
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 2.5e-305 1052.4 1111 50.4
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.0e-294 1016.1 1106 50.3
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 9.2e-292 1007.3 1107 49.9
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.2e-278 963.8 1108 49.0
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 2.0e-278 963.0 1106 47.1
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.9e-276 956.4 1108 48.5
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 7.1e-276 954.5 1106 47.1
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 6.0e-275 951.4 1110 47.5
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 7.6e-270 934.5 1103 47.5
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 6.4e-261 904.8 1115 45.2
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 8.4e-261 904.4 1112 45.4
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.1e-257 894.0 1102 44.7
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 1.1e-257 894.0 1114 45.1
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.9e-257 893.3 1119 45.1
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 5.3e-255 885.2 1119 44.9
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 5.8e-254 881.7 1114 45.0
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 7.6e-254 881.3 1111 45.3
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 7.6e-254 881.3 1118 46.5
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 2.2e-253 879.8 1102 44.1
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 3.8e-253 879.0 1086 45.9
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 3.2e-252 875.9 1114 44.8
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 4.2e-252 875.5 1116 44.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 5.4e-252 875.2 1118 44.6
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.9e-250 869.0 1106 45.5
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 2.5e-249 866.3 1108 45.8
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 5.6e-249 865.1 1039 46.3
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 3.1e-247 859.4 1104 46.3
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 2.9e-245 852.8 1106 44.8
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 8.7e-242 841.3 1109 44.7
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 9.6e-241 837.8 1109 44.6
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.1e-239 834.3 1108 44.5
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 5.8e-238 828.6 1105 42.0
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 8.4e-237 824.7 1111 42.6
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 5.5e-236 822.0 1117 42.8
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 6.7e-234 815.1 1046 45.4
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.8e-232 809.7 997 43.6
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.3e-224 784.3 1035 44.4
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.0e-221 774.6 1110 41.7
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 5.0e-221 772.3 980 44.4
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 6.5e-221 771.9 488 76.4
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 1.4e-220 770.8 1117 40.7
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 3.2e-220 769.6 1113 40.7
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 3.0e-218 763.1 1110 40.5
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 3.0e-218 763.1 1110 40.6
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 3.9e-218 762.7 1108 40.8
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 5.1e-218 762.3 1107 41.0
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 2.0e-217 760.4 1113 40.4
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 4.3e-217 759.2 1112 39.9
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.3e-216 757.7 1114 39.9
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 3.7e-216 756.1 1114 39.9
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 6.3e-216 755.4 1114 39.9
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 4.1e-215 752.7 1111 39.2
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.0e-214 750.4 692 55.3
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.9e-213 746.5 1108 40.2
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 5.0e-213 745.7 1110 39.5
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 3.2e-212 743.0 1112 40.6
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 5.5e-212 742.3 1111 42.6
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 4.7e-211 739.2 1109 38.9
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.1e-211 738.8 1111 40.4
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.3e-210 736.9 1106 39.2
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 6.7e-210 735.3 1128 39.2
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 1.5e-209 734.2 1108 39.6
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 2.2e-208 730.3 1112 38.8
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 2.4e-207 726.9 1107 40.9
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 1.2e-206 724.5 1104 39.4
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 3.8e-205 719.5 1105 38.9
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.5e-204 717.6 1102 39.8
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 6.1e-203 712.2 1111 40.9
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.0e-202 709.5 1109 39.1
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.1e-201 708.0 1113 38.4
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.6e-201 706.8 646 55.1
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 9.7e-201 704.9 1065 40.8
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.6e-198 697.6 837 46.7
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 4.2e-196 689.5 1105 39.1
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.4e-191 672.5 977 41.2
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 1.5e-188 664.5 790 46.6
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 2.5e-188 663.7 956 40.9
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 2.1e-187 660.6 658 52.7
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.8e-186 657.5 1024 40.4
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 4.0e-186 656.4 1126 36.2
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 1.2e-185 654.8 1126 36.1
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-184 651.4 1064 38.2
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.0e-181 641.7 1111 36.6
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.4e-178 631.3 1113 35.7
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 4.9e-176 622.9 997 38.0
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 9.2e-175 618.6 1135 35.9
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.1e-171 607.4 702 46.3
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.0e-161 574.3 722 44.2
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.4e-159 568.2 712 46.2
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 3.0e-149 533.9 900 38.4
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 1.9e-148 531.2 1334 30.0
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 8.1e-147 525.8 676 42.8
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 8.1e-131 472.6 726 39.4
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 4.2e-127 460.3 757 37.4
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 4.0e-122 443.7 716 39.4
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 9.0e-122 442.6 1221 29.3
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 4.5e-121 440.3 354 63.0
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 5.1e-117 426.8 582 41.4
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.2e-111 407.5 816 32.6
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.5e-111 406.8 305 67.9
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.2e-110 405.6 1130 28.8
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 9.1e-106 389.4 365 52.9
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.4e-100 369.8 386 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.7e-99 368.6 984 29.5
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.5e-97 362.1 1126 27.7
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.3e-96 359.0 767 33.1
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 8.5e-96 356.3 405 46.7
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 4.8e-91 340.5 248 71.4
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 7.2e-79 300.1 370 45.1
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 4.7e-78 297.4 665 33.7
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.7e-67 262.3 300 47.3
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 8.6e-64 250.0 371 39.4
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.9e-63 248.8 156 75.6
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.3e-59 236.1 219 55.3
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-55 223.0 279 44.4
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 5.6e-55 220.7 202 56.4
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 2.6e-52 211.8 203 56.2
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 7.8e-49 200.3 213 47.9
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.5e-47 195.3 259 41.7
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 5.2e-45 187.6 394 34.3
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.5e-39 169.5 762 23.8
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 4.3e-31 141.4 109 60.6
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.1e-30 139.0 233 35.2
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 1.9e-23 115.9 139 47.5
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.1e-21 110.2 84 58.3
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 3.1e-21 108.6 86 55.8
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.5e-20 106.3 114 50.9
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 6.0e-17 94.4 82 56.1
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 6.9e-13 80.9 108 39.8
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 1.2e-09 70.1 161 33.5
SMO141G0126 Selaginella moellendorffii HOM05D003141 ORTHO05D003633 3.5e-09 68.6 170 30.6
MBI17_g10900_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 2.3e-08 65.9 62 50.0
AT4G17330 Arabidopsis thaliana HOM05D003141 ORTHO05D003633 2.1e-06 59.3 163 27.6
AagrBONN_evm.TU.Sc2ySwM_369.388 Anthoceros agrestis HOM05D003141 ORTHO05D003633 4.8e-06 58.2 224 24.1


User provided reference genes

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