Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 5.5e-33 143.7 70 100.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.7e-21 105.5 70 72.9
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 6.9e-20 100.1 69 69.6
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 2.6e-19 98.2 69 68.1
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.3e-18 95.9 69 68.1
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 1.3e-18 95.9 69 66.7
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 5.0e-18 94.0 69 65.2
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 6.5e-18 93.6 69 65.2
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 8.5e-18 93.2 69 66.7
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.1e-17 92.8 69 69.6
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 1.1e-17 92.8 69 66.7
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 1.4e-17 92.4 69 66.7
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 2.5e-17 91.7 69 63.8
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 2.5e-17 91.7 69 65.2
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 4.2e-17 90.9 69 62.3
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 4.2e-17 90.9 69 63.8
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.4e-17 89.7 69 62.3
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.6e-16 89.0 69 60.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.6e-16 89.0 77 59.7
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.6e-16 89.0 70 61.4
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.1e-16 88.6 77 58.4
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 2.1e-16 88.6 69 60.9
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 2.1e-16 88.6 69 60.9
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.1e-16 88.6 69 56.5
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.7e-16 88.2 69 63.8
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.7e-16 88.2 69 63.8
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.7e-16 88.2 69 62.3
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.7e-16 88.2 69 63.8
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.7e-16 88.2 69 62.3
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 3.6e-16 87.8 69 60.9
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 3.6e-16 87.8 69 58.0
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.6e-16 87.8 70 68.6
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 3.6e-16 87.8 73 61.6
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 3.6e-16 87.8 69 62.3
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 3.6e-16 87.8 69 59.4
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 3.6e-16 87.8 69 59.4
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 4.7e-16 87.4 69 60.9
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 4.7e-16 87.4 69 60.9
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 4.7e-16 87.4 69 60.9
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 4.7e-16 87.4 76 56.6
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 4.7e-16 87.4 71 59.2
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 6.1e-16 87.0 69 58.0
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.1e-16 87.0 69 60.9
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 8.0e-16 86.7 71 62.0
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 8.0e-16 86.7 75 56.0
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 8.0e-16 86.7 79 55.7
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 8.0e-16 86.7 69 59.4
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.0e-15 86.3 69 59.4
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 1.0e-15 86.3 69 59.4
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 1.0e-15 86.3 69 60.9
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.0e-15 86.3 69 59.4
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.4e-15 85.9 81 53.1
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.4e-15 85.9 69 60.9
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.8e-15 85.5 69 59.4
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.8e-15 85.5 69 58.0
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 1.8e-15 85.5 69 58.0
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 1.8e-15 85.5 69 58.0
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.8e-15 85.5 69 58.0
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.8e-15 85.5 69 58.0
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 1.8e-15 85.5 69 58.0
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 2.3e-15 85.1 76 57.9
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 2.3e-15 85.1 69 58.0
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 2.3e-15 85.1 69 58.0
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 2.3e-15 85.1 71 56.3
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 3.0e-15 84.7 75 60.0
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 3.0e-15 84.7 73 56.2
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.9e-15 84.3 81 54.3
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.9e-15 84.3 81 54.3
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 5.2e-15 84.0 69 56.5
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.1e-14 82.8 70 60.0
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-14 82.4 68 61.8
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.0e-14 82.0 70 58.6
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 2.0e-14 82.0 69 55.1
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 2.6e-14 81.6 69 55.1
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 3.3e-14 81.3 69 53.6
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 4.4e-14 80.9 67 58.2
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 5.7e-14 80.5 67 58.2
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 5.7e-14 80.5 78 53.8
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 7.4e-14 80.1 74 59.5
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 9.7e-14 79.7 71 57.7
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.3e-13 79.3 69 59.4
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.7e-13 79.0 69 55.1
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 3.7e-13 77.8 72 54.2
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.7e-13 77.8 72 54.2
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 3.7e-13 77.8 69 58.0
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 3.7e-13 77.8 78 52.6
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 3.7e-13 77.8 73 54.8
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 4.8e-13 77.4 73 54.8
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 4.8e-13 77.4 71 56.3
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 4.8e-13 77.4 69 56.5
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 4.8e-13 77.4 67 53.7
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 6.3e-13 77.0 69 58.0
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 6.3e-13 77.0 73 54.8
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-12 76.3 71 56.3
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-12 76.3 71 56.3
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.1e-12 76.3 70 51.4
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-12 75.9 71 54.9
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 1.4e-12 75.9 77 53.2
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 1.4e-12 75.9 76 51.3
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 2.4e-12 75.1 67 52.2
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 3.1e-12 74.7 72 52.8
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.1e-12 74.7 70 55.7
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.3e-12 73.9 69 52.2
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 9.1e-12 73.2 74 48.6
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 1.2e-11 72.8 70 51.4
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.0e-11 72.0 69 52.2
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.6e-11 71.6 69 49.3
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 2.6e-11 71.6 70 50.0
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 3.5e-11 71.2 73 46.6
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 4.5e-11 70.9 71 50.7
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 5.9e-11 70.5 70 47.1
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.3e-10 69.3 76 46.1
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.7e-10 68.9 70 48.6
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 2.2e-10 68.6 72 45.8
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.8e-10 67.8 66 54.5
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 3.8e-10 67.8 73 45.2
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 8.5e-10 66.6 69 46.4
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 8.5e-10 66.6 77 48.1
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 8.5e-10 66.6 69 50.7
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 4.7e-08 60.8 69 44.9
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 4.0e-07 57.8 77 44.2
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 6.7e-07 57.0 74 43.2
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 7.5e-06 53.5 70 38.6


User provided reference genes

Program Settings