Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.3e-51 205.3 107 100.0
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.9e-37 159.1 107 75.7
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 2.4e-35 152.1 107 72.0
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 5.2e-35 151.0 107 72.9
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 6.9e-35 150.6 107 72.9
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.5e-34 149.4 107 73.8
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.9e-33 144.4 107 70.1
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 6.4e-33 144.1 107 69.2
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 69.2
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 67.3
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 4.2e-32 141.4 107 69.2
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 4.2e-32 141.4 108 68.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 5.4e-32 141.0 106 70.8
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.6e-31 139.4 107 67.3
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 3.5e-31 138.3 109 67.9
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 4.6e-31 137.9 108 65.7
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 6.0e-31 137.5 104 66.3
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 6.0e-31 137.5 104 66.3
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 6.0e-31 137.5 107 65.4
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.0e-30 136.7 128 60.9
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.3e-30 136.3 107 67.3
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 68.9
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 68.9
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 67.9
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 66.4
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 3.9e-30 134.8 107 66.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.9e-30 134.8 107 66.4
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 5.1e-30 134.4 104 64.4
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 65.4
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 65.4
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 65.4
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 66.0
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 8.7e-30 133.7 107 68.2
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.1e-29 133.3 104 64.4
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 1.1e-29 133.3 107 63.6
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 67.0
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 65.1
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 64.5
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 1.9e-29 132.5 89 71.9
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 4.3e-29 131.3 99 65.7
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.3e-29 131.3 107 65.4
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 5.6e-29 131.0 106 65.1
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.6e-29 131.0 107 62.6
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 5.6e-29 131.0 107 63.6
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 7.3e-29 130.6 107 63.6
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 9.6e-29 130.2 107 67.3
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.3e-28 129.8 107 62.6
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.3e-28 129.8 107 63.6
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.3e-28 129.8 93 71.0
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.1e-28 129.0 107 64.5
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 2.1e-28 129.0 107 63.6
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 3.6e-28 128.3 107 57.9
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 3.6e-28 128.3 107 62.6
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 8.1e-28 127.1 104 62.5
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 8.1e-28 127.1 107 61.7
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.1e-27 126.7 107 65.4
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.1e-27 126.7 107 61.7
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 1.8e-27 125.9 106 64.2
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.8e-27 125.9 103 60.2
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.8e-27 125.9 107 61.7
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 3.1e-27 125.2 106 63.2
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 3.1e-27 125.2 107 60.7
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.0e-27 124.8 107 63.6
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 4.0e-27 124.8 102 58.8
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 6.9e-27 124.0 98 63.3
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 6.9e-27 124.0 107 59.8
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 6.9e-27 124.0 104 59.6
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.2e-26 123.2 97 61.9
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.2e-26 123.2 106 56.6
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.2e-26 123.2 107 60.7
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.2e-26 123.2 107 60.7
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.5e-26 122.9 107 61.7
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.5e-26 122.9 106 60.4
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.0e-26 122.5 104 61.5
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 2.0e-26 122.5 104 60.6
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 2.6e-26 122.1 104 61.5
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 3.4e-26 121.7 107 61.7
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 4.5e-26 121.3 107 61.7
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 4.5e-26 121.3 93 66.7
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 5.8e-26 120.9 107 58.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 5.8e-26 120.9 101 57.4
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.6e-26 120.6 107 60.7
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 7.6e-26 120.6 107 61.7
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 7.6e-26 120.6 104 58.7
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 9.9e-26 120.2 107 59.8
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 9.9e-26 120.2 107 59.8
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 9.9e-26 120.2 104 61.5
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 9.9e-26 120.2 104 61.5
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.3e-25 119.8 107 59.8
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.7e-25 119.4 105 63.8
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 2.2e-25 119.0 107 57.9
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 2.2e-25 119.0 107 57.9
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 2.2e-25 119.0 107 57.9
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.2e-25 119.0 107 60.7
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.2e-25 119.0 107 62.6
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.8e-25 118.2 107 58.9
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 3.8e-25 118.2 107 57.9
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.9e-25 117.9 107 58.9
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.9e-25 117.9 100 58.0
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 4.9e-25 117.9 99 61.6
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 6.4e-25 117.5 108 57.4
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.1e-24 116.7 107 57.9
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.4e-24 116.3 104 62.5
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 1.4e-24 116.3 103 58.3
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.4e-24 116.3 120 55.8
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.9e-24 115.9 107 57.9
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.9e-24 115.9 108 62.0
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 2.4e-24 115.5 125 52.0
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 5.4e-24 114.4 95 62.1
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 7.1e-24 114.0 105 58.1
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 7.1e-24 114.0 93 64.5
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 9.3e-24 113.6 106 56.6
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.6e-23 112.8 106 59.4
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 2.1e-23 112.5 96 62.5
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.7e-23 112.1 93 61.3
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.5e-23 111.7 106 58.5
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 6.0e-23 110.9 100 58.0
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 5.1e-22 107.8 107 55.1
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 6.7e-22 107.5 100 60.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.5e-21 106.3 106 53.8
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.9e-21 105.9 108 53.7
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 3.3e-21 105.1 107 54.2
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 7.4e-21 104.0 107 54.2
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 7.4e-21 104.0 103 53.4
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.3e-20 103.2 108 50.9
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 6.2e-20 100.9 104 53.8
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 4.0e-19 98.2 108 50.9
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 6.9e-19 97.4 88 55.7
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.6e-18 95.5 75 69.3
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.6e-18 95.5 75 68.0
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.9e-17 92.0 88 52.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 3.5e-15 85.1 75 62.7
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.3e-14 82.4 76 61.8
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 3.3e-13 78.6 75 57.3
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 4.3e-13 78.2 74 56.8
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.6e-12 76.3 50 74.0
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.6e-12 76.3 103 45.6
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.6e-12 76.3 66 60.6
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.1e-12 75.9 67 61.2
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.7e-12 75.1 79 55.7
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 6.2e-12 74.3 63 58.7
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 9.0e-11 70.5 84 44.0
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.5e-10 69.7 86 44.2
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 2.0e-10 69.3 76 53.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.6e-10 68.9 66 59.1
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 1.9e-08 62.8 69 47.8


User provided reference genes

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