Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.1e-170 600.1 299 100.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.1e-170 600.1 299 100.0
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 6.4e-123 444.5 298 75.2
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.1e-117 427.2 295 72.9
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.1e-117 427.2 295 70.2
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 4.6e-113 411.8 295 70.8
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.3e-112 409.5 280 70.4
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 4.3e-111 405.2 290 70.0
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.3e-110 403.7 295 70.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 4.8e-110 401.7 321 67.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 9.0e-109 397.5 296 67.6
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.5e-108 396.7 295 69.8
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.0e-108 396.4 294 66.3
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.2e-107 392.9 297 67.3
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 3.2e-106 389.0 295 65.8
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 4.2e-106 388.7 295 67.1
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 7.1e-106 387.9 295 64.4
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.2e-105 387.1 294 64.3
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.1e-105 386.3 296 65.9
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 7.9e-105 384.4 295 67.1
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.0e-104 384.0 295 66.1
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.3e-104 383.6 271 68.3
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.3e-104 382.9 295 66.1
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.0e-104 382.5 298 64.8
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.7e-104 380.9 295 65.4
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-103 380.6 304 61.8
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.9e-103 379.8 298 67.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 2.5e-103 379.4 291 64.3
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.4e-103 377.9 298 62.1
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 7.4e-103 377.9 295 62.7
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.3e-102 377.1 296 64.5
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 4.8e-102 375.2 287 64.8
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.8e-101 373.2 299 63.5
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.5e-100 370.2 291 63.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 7.6e-100 367.9 291 61.5
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 7.6e-100 367.9 298 62.1
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.7e-99 366.7 290 64.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 2.9e-99 365.9 299 61.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 2.9e-99 365.9 297 62.3
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 3.8e-99 365.5 296 62.8
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 8.4e-99 364.4 294 61.2
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.4e-99 364.4 298 62.1
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.2e-98 362.1 283 66.4
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.6e-97 360.1 298 60.1
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 6.0e-97 358.2 298 59.7
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 6.0e-97 358.2 298 62.8
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.8e-96 356.7 291 58.4
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 3.9e-96 355.5 298 61.1
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.1e-96 355.1 298 61.1
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.5e-95 353.6 279 63.8
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.5e-95 353.6 298 58.7
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.7e-95 351.7 298 60.4
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 7.4e-95 351.3 298 60.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.3e-94 350.5 299 58.9
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.6e-94 350.1 304 60.2
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.6e-94 350.1 298 57.4
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.8e-94 348.6 302 59.3
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 4.8e-94 348.6 277 63.9
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-93 347.1 296 59.1
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.4e-93 346.3 311 56.6
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 4.1e-93 345.5 294 61.9
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.0e-93 344.4 298 59.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 4.5e-92 342.0 295 62.0
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.5e-92 342.0 298 58.7
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.5e-92 342.0 298 58.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 7.7e-92 341.3 294 57.5
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.2e-91 339.7 295 59.7
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.9e-90 336.7 295 60.0
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 9.4e-90 334.3 234 67.5
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.2e-89 334.0 295 59.0
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 6.1e-89 331.6 290 58.6
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.0e-88 330.9 296 58.8
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.8e-88 330.1 283 56.9
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 6.7e-88 328.2 299 55.2
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.1e-87 327.4 290 56.6
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.9e-87 326.6 299 56.2
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.9e-87 326.6 290 56.6
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.3e-86 323.9 253 60.9
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.3e-86 321.6 294 54.4
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.4e-85 320.5 299 54.2
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 5.3e-85 318.5 298 54.4
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 5.3e-85 318.5 331 51.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 6.9e-85 318.2 299 54.8
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.1e-85 317.8 294 54.1
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.0e-84 316.6 286 59.8
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.6e-84 316.2 251 62.5
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.4e-84 315.8 294 53.7
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.4e-84 315.8 263 61.6
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.4e-82 310.5 278 59.4
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 7.2e-82 308.1 250 60.0
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 9.4e-82 307.8 287 55.1
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 2.7e-81 306.2 283 57.2
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.0e-80 304.3 222 62.6
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 4.4e-79 298.9 295 51.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 4.4e-79 298.9 305 54.1
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 9.7e-79 297.7 273 56.4
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 9.1e-77 291.2 235 60.9
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.5e-76 290.4 288 53.8
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.9e-75 286.2 227 61.2
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 4.2e-74 282.3 254 58.3
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.2e-74 281.6 303 51.8
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.2e-73 280.8 254 57.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.2e-73 280.8 254 57.9
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 2.7e-73 279.6 292 50.7
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 2.0e-71 273.5 219 61.2
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 2.6e-71 273.1 274 53.6
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.7e-70 270.4 231 57.6
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.8e-69 266.9 219 61.2
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.1e-69 265.8 240 52.9
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 5.3e-69 265.4 178 75.8
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 5.9e-68 261.9 288 51.4
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.0e-67 261.2 310 49.4
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.4e-61 240.7 298 45.6
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-58 231.1 166 61.4
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 2.7e-57 226.5 223 56.5
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 6.8e-56 221.9 232 50.4
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 5.7e-55 218.8 280 46.1
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.2e-54 216.9 268 44.8
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.2e-54 216.9 253 44.3
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.2e-52 211.1 291 39.2
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 4.2e-50 202.6 225 50.7
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 8.3e-46 188.3 155 58.1
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.1e-45 186.0 287 40.4
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-41 173.7 124 64.5
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.4e-40 171.0 159 56.6
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-39 166.8 110 70.0
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 3.7e-38 162.9 137 57.7
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 4.9e-38 162.5 238 45.0
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.3e-35 154.5 154 50.0
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 9.5e-26 121.7 260 33.5
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 6.2e-25 119.0 145 50.3
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 5.4e-21 105.9 76 64.5
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 6.0e-20 102.4 114 50.9
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 6.6e-19 99.0 120 51.7
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 2.5e-18 97.1 89 53.9
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.2e-17 94.7 65 66.2
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-14 84.7 110 46.4
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-14 84.7 110 46.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 1.7e-11 74.3 45 68.9
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 7.6e-07 58.9 38 63.2
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 2.2e-06 57.4 120 38.3


User provided reference genes

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