Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 2.5e-84 315.5 164 100.0
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 2.5e-84 315.5 164 100.0
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 9.5e-44 180.6 149 63.1
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 4.4e-41 171.8 158 57.6
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 4.6e-38 161.8 152 54.6
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 1.9e-36 156.4 154 53.2
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 4.7e-35 151.8 149 54.4
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 3.1e-34 149.1 164 49.4
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 1.5e-33 146.7 149 52.3
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 2.0e-33 146.4 149 49.7
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 4.4e-33 145.2 155 51.6
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 9.8e-33 144.1 149 52.3
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 9.8e-33 144.1 131 54.2
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 9.8e-33 144.1 153 52.9
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 1.3e-32 143.7 155 51.0
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 1.3e-32 143.7 160 51.9
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 2.9e-32 142.5 159 48.4
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 3.7e-32 142.1 151 53.6
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 4.9e-32 141.7 136 52.2
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 4.9e-32 141.7 148 50.0
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 4.9e-32 141.7 153 47.1
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 8.3e-32 141.0 133 54.9
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 8.3e-32 141.0 159 48.4
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.1e-31 140.6 135 55.6
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 1.9e-31 139.8 129 52.7
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 2.4e-31 139.4 152 48.7
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.4e-31 139.4 152 50.0
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 3.2e-31 139.0 150 49.3
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 5.4e-31 138.3 152 49.3
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 5.4e-31 138.3 152 51.3
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 5.4e-31 138.3 152 51.3
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 5.4e-31 138.3 143 52.4
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 7.0e-31 137.9 144 52.1
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 9.2e-31 137.5 130 53.1
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.6e-30 136.7 152 51.3
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 1.6e-30 136.7 146 53.4
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.7e-30 136.0 152 50.7
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 2.7e-30 136.0 131 52.7
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 4.6e-30 135.2 144 53.5
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 4.6e-30 135.2 153 51.0
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 6.0e-30 134.8 137 50.4
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 7.8e-30 134.4 149 47.0
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 7.8e-30 134.4 151 47.0
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 1.0e-29 134.0 149 48.3
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.0e-29 134.0 152 50.0
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 1.0e-29 134.0 130 52.3
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.7e-29 133.3 149 50.3
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 5.0e-29 131.7 152 48.7
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 8.6e-29 131.0 156 47.4
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 1.1e-28 130.6 152 47.4
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.5e-28 130.2 142 49.3
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 1.9e-28 129.8 156 50.6
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 2.5e-28 129.4 147 53.1
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 2.5e-28 129.4 152 46.7
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.3e-28 128.6 134 50.0
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.3e-28 128.6 142 49.3
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 4.3e-28 128.6 146 48.6
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.6e-28 128.3 142 49.3
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 5.6e-28 128.3 142 49.3
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 9.5e-28 127.5 153 49.0
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.5e-28 127.5 126 53.2
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 1.2e-27 127.1 152 42.8
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.1e-27 126.3 145 46.9
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 2.1e-27 126.3 146 47.9
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 8.1e-27 124.4 152 44.7
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 1.4e-26 123.6 152 44.1
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.4e-26 123.6 134 49.3
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.4e-26 123.6 134 49.3
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-26 123.2 145 46.2
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-26 123.2 145 46.2
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 2.3e-26 122.9 159 47.2
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.0e-26 122.1 142 47.2
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 5.2e-26 121.7 136 50.7
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 1.5e-25 120.2 149 44.3
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 4.4e-25 118.6 144 45.8
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 7.5e-25 117.9 147 44.9
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 2.9e-24 115.9 132 48.5
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 6.4e-24 114.8 137 48.2
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 2.4e-23 112.8 160 41.9
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 4.1e-23 112.1 135 47.4
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 1.6e-22 110.2 136 44.9
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 4.6e-22 108.6 165 41.8
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 1.3e-21 107.1 147 42.2
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 1.7e-21 106.7 183 40.4
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 1.5e-20 103.6 164 37.8
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 1.5e-20 103.6 130 45.4
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 2.5e-20 102.8 107 53.3
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 2.5e-20 102.8 164 33.5
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 4.3e-20 102.1 133 42.9
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 5.6e-20 101.7 139 41.0
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 5.6e-20 101.7 153 37.3
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 5.6e-20 101.7 116 48.3
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 9.5e-20 100.9 96 51.0
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 1.2e-19 100.5 148 39.9
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 1.6e-19 100.1 148 39.9
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 2.1e-19 99.8 152 38.8
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 2.1e-19 99.8 165 37.0
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 2.1e-19 99.8 139 42.4
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 2.8e-19 99.4 148 39.9
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 2.8e-19 99.4 148 39.9
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 2.8e-19 99.4 168 34.5
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 3.6e-19 99.0 162 40.1
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 2.4e-18 96.3 163 35.6
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 3.1e-18 95.9 175 39.4
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 3.1e-18 95.9 175 39.4
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 3.1e-18 95.9 137 38.7
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 1.2e-17 94.0 145 39.3
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 1.5e-17 93.6 167 36.5
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 2.6e-17 92.8 168 34.5
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 2.6e-17 92.8 148 37.8
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 3.4e-17 92.4 165 35.2
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 4.4e-17 92.0 165 35.2
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 5.8e-17 91.7 146 39.7
Dinv21202 Davidia involucrata HOM05D002916 ORTHO05D003152 7.6e-17 91.3 84 56.0
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 1.3e-16 90.5 147 38.1
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 1.3e-16 90.5 176 34.7
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 1.3e-16 90.5 176 34.7
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.3e-16 90.5 147 36.1
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 4.9e-16 88.6 172 35.5
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 6.4e-16 88.2 163 35.0
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 6.4e-16 88.2 174 34.5
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 6.4e-16 88.2 163 35.0
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 8.4e-16 87.8 163 34.4
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 1.1e-15 87.4 167 34.1
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 1.1e-15 87.4 166 31.9
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 1.4e-15 87.0 148 35.8
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 1.9e-15 86.7 163 35.0
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 2.4e-15 86.3 129 38.8
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 3.5e-14 82.4 59 57.6
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 1.0e-13 80.9 152 36.8
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 3.0e-13 79.3 157 36.9
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 3.9e-13 79.0 171 33.9
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 3.9e-13 79.0 137 36.5
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 3.9e-13 79.0 137 36.5
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 3.9e-13 79.0 140 35.7
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 5.1e-13 78.6 90 46.7
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 6.6e-13 78.2 82 47.6
SGA_v2.0_scaffold35G14068 Striga asiatica HOM05D002916 ORTHO05D003152 1.5e-12 77.0 98 48.0
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 1.5e-12 77.0 145 35.2
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 1.2e-11 73.9 147 34.0
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 6.2e-11 71.6 113 39.8
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 1.1e-10 70.9 132 38.6
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 1.8e-10 70.1 148 29.1
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 3.1e-10 69.3 136 36.8
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 3.1e-10 69.3 147 32.0
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 9.0e-10 67.8 148 29.1
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 9.0e-10 67.8 141 34.8
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.5e-09 67.0 145 34.5
Nitab4.5_0009023g0020 Nicotiana tabacum HOM05D002916 ORTHO05D003152 1.5e-09 67.0 141 35.5
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 2.0e-09 66.6 150 33.3
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.6e-09 66.2 143 33.6
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.3e-08 63.9 143 32.9
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 1.3e-08 63.9 144 29.9
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 1.7e-08 63.5 142 36.6
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 1.7e-08 63.5 147 35.4
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.2e-08 63.2 127 33.9
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 2.2e-08 63.2 155 34.2
PSO266G0041 Papaver somniferum HOM05D002916 ORTHO05D003152 3.8e-08 62.4 149 30.9
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 3.8e-08 62.4 156 34.0
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 6.4e-08 61.6 154 29.9
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 8.4e-08 61.2 147 30.6
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 1.1e-07 60.8 164 29.9
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 1.9e-07 60.1 131 33.6
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.9e-07 60.1 154 31.8
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 2.4e-07 59.7 141 32.6
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 4.2e-07 58.9 160 30.6
Potri.015G005700 Populus trichocarpa HOM05D002916 ORTHO05D003152 4.2e-07 58.9 141 31.9
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 5.4e-07 58.5 128 33.6
CsaV3_5G000050 Cucumis sativus L. HOM05D002916 ORTHO05D003152 5.4e-07 58.5 124 30.6
Nn3g18859 Nelumbo nucifera HOM05D002916 ORTHO05D003152 5.4e-07 58.5 112 38.4
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 7.1e-07 58.2 137 29.9
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 7.1e-07 58.2 144 31.2
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 1.2e-06 57.4 124 30.6
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 1.6e-06 57.0 139 33.1
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.6e-06 57.0 75 42.7
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 1.6e-06 57.0 152 28.9
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 1.6e-06 57.0 124 29.8
ECA236G4089 Erigeron canadensis HOM05D002916 ORTHO05D003152 2.7e-06 56.2 150 32.7
Lalb_Chr08g0239761 Lupinus albus HOM05D002916 ORTHO05D003152 2.7e-06 56.2 141 31.2
TPR.G36204 Trifolium pratense HOM05D002916 ORTHO05D003152 2.7e-06 56.2 143 30.1
Lsat_1_v5_gn_8_77181 Lactuca sativa HOM05D002916 ORTHO05D003152 3.5e-06 55.8 132 28.8
Actinidia34261 Actinidia chinensis HOM05D002916 ORTHO05D003152 4.6e-06 55.5 129 29.5
PGR042G3508 Punica granatum HOM05D002916 ORTHO05D003152 4.6e-06 55.5 141 28.4
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 6.0e-06 55.1 156 33.3
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 7.8e-06 54.7 120 30.8


User provided reference genes

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