Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.3e-86 321.2 158 100.0
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.3e-86 321.2 158 100.0
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 4.3e-70 268.1 158 83.5
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 3.1e-68 261.9 158 76.6
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 9.1e-68 260.4 158 76.6
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 9.1e-68 260.4 158 79.7
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 9.1e-68 260.4 147 83.7
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 1.5e-67 259.6 158 77.8
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 5.9e-67 257.7 155 80.0
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 5.9e-67 257.7 158 77.8
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 6.5e-66 254.2 149 83.2
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 1.4e-65 253.1 156 75.6
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 3.2e-65 251.9 158 79.1
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 3.2e-65 251.9 158 79.1
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 7.2e-65 250.8 158 74.7
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 1.2e-64 250.0 158 75.3
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 1.6e-64 249.6 154 78.6
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 2.7e-64 248.8 158 72.8
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 2.7e-64 248.8 158 73.4
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 3.6e-64 248.4 158 73.4
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 4.7e-64 248.1 158 75.9
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 4.7e-64 248.1 158 75.3
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 6.1e-64 247.7 158 73.4
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 7.9e-64 247.3 156 76.3
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 7.9e-64 247.3 156 75.0
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 1.0e-63 246.9 158 73.4
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.0e-63 246.9 149 78.5
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 1.4e-63 246.5 158 73.4
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 1.4e-63 246.5 158 74.7
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 1.4e-63 246.5 158 75.3
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.8e-63 246.1 158 73.4
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 2.3e-63 245.7 156 76.3
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.3e-63 245.7 155 78.1
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 3.0e-63 245.4 158 73.4
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 3.0e-63 245.4 146 79.5
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 6.7e-63 244.2 158 72.8
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 8.8e-63 243.8 157 72.6
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 1.1e-62 243.4 158 74.1
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 2.6e-62 242.3 158 72.8
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 3.3e-62 241.9 149 76.5
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 4.4e-62 241.5 148 76.4
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 4.4e-62 241.5 157 71.3
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 5.7e-62 241.1 158 71.5
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 7.4e-62 240.7 156 73.1
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 7.4e-62 240.7 155 72.9
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 1.3e-61 240.0 149 75.2
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.3e-61 240.0 149 76.5
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 1.7e-61 239.6 158 73.4
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.7e-61 239.6 158 72.8
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 2.2e-61 239.2 158 74.1
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 4.8e-61 238.0 158 73.4
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 6.3e-61 237.7 153 69.9
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 8.2e-61 237.3 158 72.2
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 8.2e-61 237.3 158 72.2
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 1.1e-60 236.9 149 75.2
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 1.4e-60 236.5 149 73.8
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.4e-60 236.5 146 78.1
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.8e-60 236.1 149 72.5
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 3.1e-60 235.3 146 75.3
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 4.1e-60 235.0 146 76.0
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.2e-59 233.4 149 75.2
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 1.2e-59 233.4 147 73.5
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 2.0e-59 232.6 149 75.2
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 2.0e-59 232.6 148 73.6
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 2.6e-59 232.3 149 74.5
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 3.5e-59 231.9 156 70.5
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 4.5e-59 231.5 158 68.4
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 4.5e-59 231.5 147 73.5
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 7.7e-59 230.7 158 69.0
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 1.0e-58 230.3 148 74.3
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.3e-58 229.9 149 73.8
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 1.7e-58 229.6 156 71.2
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.8e-58 228.4 149 73.2
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 6.5e-58 227.6 147 71.4
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 1.1e-57 226.9 143 75.5
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 1.1e-57 226.9 147 72.8
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.5e-57 226.5 147 70.1
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 2.5e-57 225.7 146 73.3
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 7.2e-57 224.2 157 70.1
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 9.4e-57 223.8 152 70.4
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 2.1e-56 222.6 143 73.4
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 2.7e-56 222.2 146 71.9
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.6e-56 221.9 160 66.9
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 3.6e-56 221.9 147 71.4
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 4.7e-56 221.5 147 70.1
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 8.0e-56 220.7 148 70.3
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.4e-55 219.9 147 70.1
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.0e-55 218.8 145 71.0
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 4.0e-55 218.4 135 74.8
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 6.7e-55 217.6 146 69.9
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 2.2e-53 212.6 147 67.3
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 2.8e-53 212.2 157 65.0
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.4e-52 209.9 153 64.7
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.8e-52 209.5 160 63.1
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 2.4e-52 209.1 153 64.1
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 4.1e-52 208.4 146 67.8
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 4.1e-52 208.4 127 80.3
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 7.0e-52 207.6 153 62.7
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 7.0e-52 207.6 146 65.8
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 9.1e-52 207.2 153 62.7
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 2.0e-51 206.1 146 65.1
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 2.0e-51 206.1 146 65.1
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 5.9e-51 204.5 142 66.2
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 1.0e-50 203.8 144 66.0
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 2.9e-50 202.2 155 61.3
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 2.9e-50 202.2 144 66.0
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 3.8e-50 201.8 146 63.7
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 3.8e-50 201.8 146 63.7
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.4e-47 193.4 146 65.1
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 6.8e-47 191.0 153 61.4
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 8.8e-47 190.7 147 61.2
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.3e-45 186.8 146 59.6
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 2.2e-45 186.0 145 62.1
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 8.3e-45 184.1 127 73.2
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.2e-41 172.2 118 70.3
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 2.3e-39 166.0 109 74.3
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 9.8e-38 160.6 146 52.1
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 3.7e-37 158.7 99 76.8
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.4e-36 156.8 146 49.3
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 2.4e-36 156.0 131 56.5
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 4.5e-35 151.8 148 49.3
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 1.0e-34 150.6 132 58.3
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 1.3e-34 150.2 144 52.1
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.8e-34 148.7 98 70.4
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 5.0e-34 148.3 145 50.3
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 6.8e-31 137.9 143 50.3
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 2.2e-29 132.9 95 64.2
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 2.4e-28 129.4 145 49.7
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 1.1e-25 120.6 141 46.8
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 8.9e-23 110.9 89 61.8
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 9.8e-22 107.5 85 58.8
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 8.3e-21 104.4 142 40.1
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 2.4e-20 102.8 147 41.5
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.5e-17 93.6 84 52.4


User provided reference genes

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