Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.9e-272 941.8 453 100.0
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.8e-230 802.4 387 100.0
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 1.1e-227 793.1 456 82.5
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-218 763.1 456 79.6
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 8.6e-212 740.3 456 77.9
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 8.9e-209 730.3 456 75.4
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 3.6e-202 708.4 454 74.7
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.3e-196 689.1 453 71.7
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.1e-195 686.8 456 70.6
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.2e-194 683.3 457 71.1
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 8.1e-194 680.6 453 70.9
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.8e-193 679.5 456 70.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 7.5e-192 674.1 455 69.7
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.9e-191 671.4 490 66.7
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.9e-191 671.4 456 69.5
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 4.9e-191 671.4 456 69.3
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 2.4e-190 669.1 456 68.4
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.2e-190 668.7 456 69.7
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.5e-189 665.2 456 69.5
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 6.0e-189 664.5 454 68.9
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.7e-188 662.9 457 68.9
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 6.6e-188 661.0 453 70.6
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 2.5e-187 659.1 456 68.4
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 5.6e-187 657.9 456 68.0
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.6e-187 657.9 456 68.0
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 5.6e-187 657.9 518 63.7
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 2.1e-186 656.0 456 67.3
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.8e-186 655.6 456 67.8
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.8e-186 655.6 456 67.8
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.7e-186 654.8 456 67.8
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 4.7e-186 654.8 453 69.5
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 4.0e-185 651.7 456 67.5
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 4.0e-185 651.7 456 68.9
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 5.2e-185 651.4 453 68.2
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 8.9e-185 650.6 456 68.4
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 2.0e-184 649.4 454 66.5
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 3.4e-184 648.7 456 66.2
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 3.4e-184 648.7 453 68.0
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.9e-183 645.6 456 67.3
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.9e-182 642.9 453 66.7
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 3.2e-182 642.1 456 66.2
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 9.2e-182 640.6 456 66.7
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.5e-181 638.6 455 65.7
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 6.0e-181 637.9 454 66.7
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.0e-181 637.9 454 65.2
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.3e-180 636.7 454 66.7
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.7e-180 636.3 454 64.8
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 3.9e-180 635.2 454 65.2
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 3.9e-180 635.2 454 65.6
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.9e-179 632.9 455 67.3
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 5.6e-179 631.3 454 65.4
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 2.4e-177 625.9 457 65.0
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 4.0e-177 625.2 454 65.0
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 5.2e-177 624.8 454 66.1
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 2.0e-176 622.9 454 65.9
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.7e-175 619.8 454 64.8
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 2.9e-175 619.0 454 64.8
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 1.1e-174 617.1 453 66.0
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 5.4e-174 614.8 457 64.1
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 6.0e-173 611.3 456 64.5
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.0e-172 609.0 453 64.7
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-171 607.1 455 63.7
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 4.3e-171 605.1 455 63.5
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 4.8e-170 601.7 456 63.8
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.1e-169 599.0 454 63.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 9.0e-169 597.4 454 64.3
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.5e-168 596.7 456 62.7
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 5.8e-168 594.7 456 63.8
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.1e-166 590.5 457 62.8
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.1e-166 590.5 457 62.4
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 1.9e-166 589.7 457 61.3
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.2e-166 588.6 454 62.6
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 5.4e-166 588.2 454 64.1
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 2.7e-165 585.9 454 64.3
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 6.0e-165 584.7 457 62.6
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 7.9e-165 584.3 457 61.7
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.3e-164 582.8 454 63.7
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 3.0e-164 582.4 484 59.5
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 5.1e-164 581.6 454 62.1
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.1e-163 580.5 457 61.7
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.4e-161 573.5 457 60.6
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 4.0e-161 572.0 454 61.0
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.5e-160 570.1 454 60.4
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 3.8e-159 565.5 456 61.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 4.9e-159 565.1 456 61.4
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 4.2e-158 562.0 454 58.6
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.6e-154 550.1 453 61.4
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.4e-153 547.0 393 66.9
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.4e-153 546.2 453 57.0
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 3.4e-152 542.3 456 58.6
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.8e-145 520.0 372 67.2
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 4.5e-144 515.4 456 54.4
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 5.0e-143 511.9 477 57.7
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.9e-142 510.0 454 57.7
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.9e-142 510.0 395 61.0
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 5.7e-131 471.9 454 54.0
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 4.7e-117 425.6 455 47.7
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.5e-115 420.6 453 48.3
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 2.2e-111 406.8 265 70.2
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.4e-105 386.7 428 48.6
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.2e-102 375.9 438 50.2
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.2e-98 363.6 456 42.1
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 7.8e-96 355.1 251 64.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.5e-94 350.1 437 43.5
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.3e-94 349.4 383 47.8
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 4.7e-93 345.9 272 60.3
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 4.0e-92 342.8 206 73.8
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.9e-90 335.9 225 68.4
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 3.2e-89 333.2 276 60.1
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.8e-84 315.5 439 40.1
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.4e-81 307.8 243 64.2
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 2.4e-73 280.4 506 34.6
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.4e-73 279.3 188 73.4
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.4e-57 227.3 125 75.2
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.3e-53 214.9 125 80.8
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 6.9e-52 209.1 275 44.4
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 4.5e-51 206.5 189 49.7
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.7e-50 204.5 273 42.9
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.4e-49 200.7 125 78.4
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 9.6e-46 188.7 213 44.6
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.2e-34 151.0 168 52.4
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.5e-34 149.4 111 65.8
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.1e-33 148.7 114 56.1
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.3e-31 141.7 146 52.1
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.7e-22 109.0 54 87.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 2.2e-21 107.8 66 69.7
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 9.1e-20 102.4 66 66.7
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 2.8e-13 80.9 61 57.4
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 1.8e-07 61.6 50 56.0
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 3.0e-07 60.8 46 60.9
VMungo0331G0048 Vigna mungo HOM05D000010 ORTHO05D435787 1.1e-06 58.9 47 61.7


User provided reference genes

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