Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 3.0e-159 565.1 271 100.0
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.4e-132 476.5 303 75.2
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 5.2e-132 474.6 303 75.2
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 2.2e-130 469.2 305 74.8
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.9e-129 466.1 268 82.8
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.9e-129 466.1 312 72.4
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.2e-128 463.4 305 73.8
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 3.5e-128 461.8 305 74.4
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 3.9e-127 458.4 305 72.5
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 6.6e-127 457.6 305 72.8
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 8.7e-127 457.2 302 73.2
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 3.3e-126 455.3 304 73.0
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 3.3e-126 455.3 301 73.4
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 7.3e-126 454.1 301 72.4
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 2.1e-125 452.6 305 70.5
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 2.1e-125 452.6 305 71.5
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 2.8e-125 452.2 299 72.6
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 2.8e-125 452.2 305 71.8
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 2.8e-125 452.2 299 72.9
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 4.8e-125 451.4 299 72.2
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 8.1e-125 450.7 305 71.1
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.4e-124 449.1 299 71.9
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 4.0e-124 448.4 299 71.2
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 5.3e-124 448.0 307 71.7
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 6.9e-124 447.6 302 71.2
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.9e-124 447.6 305 71.5
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 6.9e-124 447.6 305 71.5
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 9.0e-124 447.2 303 71.0
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 9.0e-124 447.2 299 72.6
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 9.0e-124 447.2 305 69.5
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.2e-123 446.8 302 72.5
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.5e-123 446.4 301 71.4
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.0e-123 446.0 302 70.2
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 3.4e-123 445.3 305 70.5
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 3.4e-123 445.3 305 70.5
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 3.4e-123 445.3 305 71.8
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 3.4e-123 445.3 303 71.0
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.4e-123 445.3 299 70.9
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 4.5e-123 444.9 299 72.2
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.3e-122 443.4 305 69.5
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 1.3e-122 443.4 301 71.1
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 1.7e-122 443.0 305 69.5
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.7e-122 443.0 305 70.5
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.7e-122 443.0 302 71.9
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.2e-122 442.6 296 72.6
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 2.2e-122 442.6 297 73.1
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 2.9e-122 442.2 305 70.5
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 3.8e-122 441.8 303 69.6
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 3.8e-122 441.8 303 70.0
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 4.9e-122 441.4 302 70.5
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 4.9e-122 441.4 299 70.9
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 4.9e-122 441.4 305 69.8
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 6.4e-122 441.0 303 70.0
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.1e-121 440.3 305 70.2
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.9e-121 439.5 303 71.6
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 3.2e-121 438.7 302 70.9
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 4.2e-121 438.3 303 69.3
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 5.4e-121 438.0 299 70.6
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 5.4e-121 438.0 313 68.7
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 5.4e-121 438.0 313 68.7
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 9.3e-121 437.2 305 68.5
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 9.3e-121 437.2 299 69.9
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.6e-120 436.4 302 70.5
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.6e-120 436.4 299 70.6
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 1.6e-120 436.4 308 69.5
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 2.1e-120 436.0 242 84.7
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 2.7e-120 435.6 313 68.1
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 3.5e-120 435.3 299 71.2
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 4.6e-120 434.9 302 68.2
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 4.6e-120 434.9 305 69.2
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 4.6e-120 434.9 305 71.1
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.0e-120 434.5 300 70.0
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.0e-119 433.7 313 67.7
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.0e-119 433.7 300 70.0
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.3e-119 433.3 299 69.9
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.8e-119 433.0 299 71.6
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 3.0e-119 432.2 297 70.4
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 3.3e-118 428.7 299 68.9
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 9.6e-118 427.2 303 68.3
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 8.1e-117 424.1 302 67.2
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 7.6e-115 417.5 362 59.7
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 4.9e-114 414.8 297 68.4
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 4.2e-113 411.8 300 67.0
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 5.5e-113 411.4 282 70.2
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 3.0e-111 405.6 239 81.6
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.3e-109 400.2 268 73.5
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.1e-109 399.4 254 76.4
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 7.6e-107 391.0 233 80.3
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 3.2e-105 385.6 302 60.3
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 1.2e-104 383.6 240 76.7
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.8e-103 379.8 297 61.6
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 3.3e-102 375.6 281 64.4
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 9.7e-102 374.0 292 64.0
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 2.4e-100 369.4 255 70.2
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 4.1e-100 368.6 267 64.0
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 4.1e-100 368.6 254 70.1
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 7.6e-99 364.4 253 70.0
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.0e-98 364.0 253 70.0
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.0e-98 364.0 298 58.4
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 1.9e-97 359.8 254 69.7
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 4.2e-97 358.6 213 78.9
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 5.5e-97 358.2 256 68.8
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 7.2e-97 357.8 253 69.6
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 3.9e-95 352.1 282 58.9
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.1e-86 323.9 282 55.0
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 1.5e-86 323.6 187 80.7
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.4e-79 300.4 204 69.1
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.1e-76 290.8 298 49.0
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-76 290.8 182 75.3
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 7.0e-68 261.5 165 74.5
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 3.2e-65 252.7 314 42.4
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.2e-64 250.8 293 45.4
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 1.2e-64 250.8 144 80.6
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.0e-58 231.1 182 65.9
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.5e-57 227.3 288 39.2
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.6e-56 223.8 187 60.4
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.7e-53 213.8 286 43.0
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 7.0e-52 208.4 118 79.7
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 5.9e-51 205.3 132 73.5
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.1e-49 201.1 115 80.0
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 3.6e-48 196.1 154 63.0
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 1.7e-37 160.6 154 56.5
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 1.4e-36 157.5 118 64.4
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.3e-34 151.0 107 67.3
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 6.2e-32 142.1 90 70.0
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.9e-31 138.3 117 60.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 6.4e-29 132.1 84 72.6
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 1.9e-25 120.6 108 57.4
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 9.5e-25 118.2 210 37.6
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 6.2e-24 115.5 311 31.2
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.7e-18 97.4 69 68.1
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 8.7e-18 95.1 94 54.3
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 4.3e-17 92.8 69 65.2
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 6.2e-16 89.0 49 81.6
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.4e-14 82.8 93 49.5
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 4.9e-13 79.3 123 35.8
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 8.4e-13 78.6 49 69.4
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 9.3e-12 75.1 39 89.7
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 9.3e-12 75.1 39 89.7
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 2.1e-11 73.9 55 61.8
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 2.7e-11 73.6 39 87.2
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 2.5e-09 67.0 81 48.1
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.5e-09 67.0 160 31.9
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 4.8e-08 62.8 36 80.6
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 4.8e-08 62.8 64 48.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 8.1e-08 62.0 228 27.6
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.1e-07 61.6 205 28.3
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 1.4e-07 61.2 51 49.0
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 6.9e-07 58.9 139 28.8
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.2e-06 58.2 215 26.5


User provided reference genes

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