Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.2e-112 409.8 208 100.0
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.2e-104 383.3 207 93.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 91.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 5.1e-103 377.9 208 91.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 91.3
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 91.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 91.3
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.5e-102 375.6 208 90.9
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 90.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 91.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 91.3
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 90.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 4.3e-102 374.8 206 92.2
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 4.3e-102 374.8 207 90.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.7e-102 374.4 208 90.4
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 90.8
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 5.7e-102 374.4 206 90.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.7e-102 374.4 208 90.4
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 5.7e-102 374.4 207 90.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 91.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 90.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 89.9
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 91.8
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 90.4
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 89.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 90.9
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 90.9
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 90.9
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 90.9
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 90.4
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-101 372.5 208 89.4
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.2e-101 372.5 208 90.9
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.8e-101 372.1 206 90.8
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.8e-101 372.1 206 91.3
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 2.8e-101 372.1 208 89.9
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.8e-101 372.1 208 90.9
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.8e-101 372.1 208 89.9
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.7e-101 371.7 208 89.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.7e-101 371.7 210 90.0
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 88.9
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 89.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 89.4
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 8.2e-101 370.5 206 90.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 89.4
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 89.4
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 88.9
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.4
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.9
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.4e-100 369.0 207 88.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 2.4e-100 369.0 206 88.8
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 88.9
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 5.3e-100 367.9 207 89.4
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 5.3e-100 367.9 208 88.5
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.9e-100 367.5 208 89.9
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.9
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.2e-99 366.7 213 88.7
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 89.4
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.5e-99 366.3 207 89.4
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.5e-99 366.3 206 89.3
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 89.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.0e-99 365.9 206 88.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.9
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 7.7e-99 364.0 218 85.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.0
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.9
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 87.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 5.0e-98 361.3 203 89.7
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.1e-97 360.1 209 88.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.1e-97 360.1 207 87.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.9e-97 359.4 208 87.5
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.2e-97 358.6 209 87.1
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.2e-97 358.6 209 87.1
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.2e-97 358.2 209 87.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 87.0
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 87.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.2e-96 356.7 207 88.9
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 86.5
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 2.7e-96 355.5 205 86.8
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 86.5
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.7e-96 354.8 205 86.8
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 6.1e-96 354.4 208 86.5
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 6.1e-96 354.4 208 86.5
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.3e-95 352.4 208 85.1
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.3e-95 352.4 208 87.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 3.9e-95 351.7 196 91.3
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 83.7
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 85.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-94 349.4 207 86.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-94 349.4 207 86.0
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.6e-94 349.0 208 85.6
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-94 348.6 207 86.0
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 4.4e-94 348.2 208 84.6
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 7.4e-94 347.4 208 84.6
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 7.4e-94 347.4 208 82.7
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 9.7e-94 347.1 208 82.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 2.2e-93 345.9 208 84.1
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 3.7e-93 345.1 208 85.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.1e-92 342.0 207 84.1
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 7.0e-92 340.9 208 85.6
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.5e-91 338.2 178 93.3
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.0e-90 337.0 180 90.6
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 6.5e-90 334.3 183 90.2
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 7.2e-89 330.9 178 91.0
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.7e-88 328.2 206 82.5
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.3e-87 325.9 178 90.4
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.2e-85 319.3 177 88.1
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.4e-84 315.8 210 80.5
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.2e-83 313.5 190 83.7
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.0e-83 312.8 208 73.1
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 5.0e-82 308.1 208 79.3
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.8e-79 299.7 171 85.4
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.7e-77 293.1 156 92.9
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.1e-76 288.5 156 92.3
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 4.1e-76 288.5 205 74.1
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.0e-71 273.9 207 70.5
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.2e-70 270.4 232 64.7
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.7e-67 259.2 206 68.0
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.5e-65 253.4 203 61.6
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 3.3e-65 252.3 202 61.4
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.8e-63 246.5 200 59.0
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 5.2e-63 245.0 168 78.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.2e-62 243.8 198 62.1
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.1e-57 227.3 120 93.3
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 4.3e-57 225.3 197 55.8
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 3.4e-54 215.7 133 85.0
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 9.8e-54 214.2 151 75.5
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 5.4e-52 208.4 207 51.7
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.6e-51 206.8 148 72.3
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.3e-50 203.0 207 53.1
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 8.9e-47 191.0 197 46.7
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 4.4e-46 188.7 209 54.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 45.9
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.7e-42 176.8 160 63.8
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 8.6e-42 174.5 208 51.4
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-40 170.2 98 84.7
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 4.7e-40 168.7 231 41.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 7.3e-33 144.8 206 47.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 3.6e-32 142.5 96 80.2
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 6.8e-31 138.3 99 73.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 9.9e-30 134.4 187 37.4
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.1e-28 128.3 74 87.8
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 4.6e-27 125.6 92 70.7
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 2.3e-26 123.2 135 54.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.5e-25 119.8 83 73.5
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-24 117.1 60 88.3
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 3.4e-22 109.4 73 78.1
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 5.8e-22 108.6 82 67.1
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 9.9e-22 107.8 60 88.3
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 5.8e-14 82.0 61 65.6
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 2.3e-10 70.1 62 66.1
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 4.8e-08 62.4 38 76.3
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.8e-07 60.5 39 69.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.8e-07 60.5 69 56.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 4.5e-06 55.8 138 25.4


User provided reference genes

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