Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 5.6e-231 803.9 401 100.0
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 7.9e-169 597.4 411 73.2
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 3.3e-159 565.5 413 69.5
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 2.4e-149 532.7 408 66.4
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.0e-144 517.3 408 65.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 5.2e-144 515.0 487 56.3
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 3.7e-142 508.8 408 63.5
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 5.4e-141 505.0 408 62.7
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 7.0e-141 504.6 496 55.6
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 3.5e-140 502.3 407 63.6
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 3.6e-137 492.3 401 63.1
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 8.9e-136 487.6 410 63.4
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.5e-135 486.9 413 61.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.4e-135 485.3 402 63.4
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 9.8e-135 484.2 415 60.7
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.7e-134 483.4 335 73.4
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 2.4e-133 479.6 400 62.8
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 7.0e-133 478.0 402 60.4
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 9.2e-133 477.6 404 61.1
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 9.2e-133 477.6 404 61.6
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.6e-132 476.9 396 62.1
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 2.0e-132 476.5 399 60.7
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.7e-132 476.1 411 59.1
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.7e-132 476.1 409 60.4
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 7.8e-132 474.6 329 70.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.3e-131 473.8 339 67.6
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.3e-131 473.8 405 60.5
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.0e-131 472.6 410 62.0
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 5.0e-131 471.9 396 62.1
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.0e-131 471.9 408 60.3
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 5.0e-131 471.9 402 60.7
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 6.6e-131 471.5 412 57.5
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.1e-130 470.7 399 61.7
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 3.3e-130 469.2 396 60.9
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 9.5e-130 467.6 399 58.9
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.2e-129 467.2 407 59.2
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.6e-129 466.8 405 58.8
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.6e-129 465.7 408 60.0
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 4.7e-129 465.3 399 58.9
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 6.2e-129 464.9 395 59.7
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 6.2e-129 464.9 375 63.2
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 8.0e-129 464.5 426 59.2
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.4e-128 463.8 398 58.8
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 3.1e-128 462.6 409 57.9
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 6.8e-128 461.5 399 57.4
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 8.9e-128 461.1 317 72.9
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.2e-127 460.7 395 59.0
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.5e-127 460.3 306 71.9
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.5e-127 460.3 414 61.6
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 2.6e-127 459.5 324 68.2
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.2e-126 456.4 399 58.4
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 8.3e-126 454.5 331 65.6
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 9.2e-125 451.1 351 64.7
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.2e-124 450.7 399 57.1
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.7e-124 449.5 402 55.7
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 2.7e-124 449.5 403 55.8
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 4.6e-124 448.7 411 56.0
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 4.6e-124 448.7 325 66.5
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 6.0e-124 448.4 399 56.1
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 7.8e-124 448.0 397 56.2
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.0e-123 447.6 390 58.5
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.3e-123 447.2 401 55.9
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 3.0e-123 446.0 351 61.5
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 6.6e-123 444.9 401 55.9
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 8.6e-123 444.5 405 58.3
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 1.1e-122 444.1 399 56.1
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 1.1e-122 444.1 399 56.1
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.5e-122 443.7 399 55.9
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.5e-122 443.0 393 56.0
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.3e-122 442.6 331 62.2
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 3.3e-122 442.6 399 56.6
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 4.3e-122 442.2 406 55.9
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 4.3e-122 442.2 470 53.2
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 9.5e-122 441.0 402 55.2
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.2e-121 440.7 399 56.4
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.2e-121 440.7 406 56.9
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.8e-121 439.5 400 56.0
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 4.7e-121 438.7 320 65.6
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.7e-121 438.7 399 55.1
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 2.3e-120 436.4 419 54.7
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.1e-120 436.0 401 54.4
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 8.9e-120 434.5 398 54.8
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 8.9e-120 434.5 389 58.4
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 3.9e-115 419.1 402 54.0
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 6.6e-115 418.3 400 55.0
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.1e-114 417.5 407 53.1
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.9e-114 416.8 336 65.5
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 3.3e-114 416.0 400 55.5
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 5.6e-114 415.2 395 53.7
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.5e-114 414.5 334 62.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.2e-113 414.1 311 62.1
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.6e-113 413.7 405 54.3
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 8.9e-112 407.9 406 52.0
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.9e-110 402.9 299 61.5
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.1e-109 401.0 300 60.0
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.0e-107 394.4 392 53.1
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.3e-107 394.0 393 52.7
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 4.3e-106 389.0 374 52.7
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.2e-105 387.5 319 58.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.2e-103 380.9 389 50.9
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.6e-100 369.0 406 48.3
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.5e-98 364.0 320 54.7
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.4e-96 357.5 306 61.1
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 3.4e-95 352.8 401 46.9
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.6e-89 334.0 308 55.5
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 3.1e-88 329.7 449 42.8
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.9e-86 323.2 291 58.8
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 8.4e-86 321.6 308 53.9
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.1e-81 305.1 230 62.6
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 6.5e-78 295.4 281 53.4
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.5e-77 293.5 286 54.9
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 2.1e-76 290.4 355 50.4
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 4.3e-74 282.7 365 44.9
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 7.4e-74 282.0 399 44.1
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 6.3e-57 225.7 283 46.3
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 2.3e-51 207.2 270 41.1
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 4.7e-44 183.0 120 67.5
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.6e-42 177.2 133 62.4
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 7.7e-39 165.6 179 45.8
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.3e-38 164.9 313 32.9
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 3.2e-37 160.2 347 30.3
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 8.0e-36 155.6 125 61.6
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.2e-33 147.5 255 36.9
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.5e-29 134.8 76 78.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 8.0e-28 129.0 213 37.1
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.0e-27 127.1 149 42.3
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 3.4e-26 123.6 102 62.7
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 6.3e-25 119.4 94 67.0
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 2.0e-23 114.4 111 52.3
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 2.7e-23 114.0 255 36.5
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.7e-23 114.0 68 73.5
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.9e-22 110.5 247 27.9
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.6e-20 104.8 343 24.8
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.6e-20 104.8 95 55.8
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 4.9e-17 93.2 156 41.7
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.6e-15 86.7 73 64.4
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.6e-12 78.2 287 24.4
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 7.8e-07 59.3 114 35.1
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 7.8e-07 59.3 114 35.1
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.3e-06 57.8 40 57.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.9e-06 57.0 59 54.2


User provided reference genes

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