Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 0.0e+00 1091.6 552 100.0
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 4.8e-241 837.8 552 73.9
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.7e-233 812.8 552 72.8
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 2.8e-233 812.0 569 71.7
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 5.0e-230 801.2 552 71.9
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 1.8e-227 792.7 552 70.5
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 6.7e-227 790.8 552 70.1
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 1.5e-226 789.6 578 68.5
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 2.9e-222 775.4 556 68.7
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.2e-220 770.0 542 67.0
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.8e-219 766.1 543 67.2
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 8.8e-219 763.8 551 66.8
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 2.2e-217 759.2 552 67.2
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 4.8e-217 758.1 551 65.9
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 9.1e-216 753.8 552 66.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 5.9e-215 751.1 552 65.9
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 1.5e-213 746.5 550 65.6
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 1.5e-213 746.5 546 66.1
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 1.5e-213 746.5 551 66.4
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 2.1e-212 742.7 551 65.2
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 3.6e-212 741.9 552 65.0
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 3.6e-212 741.9 552 65.0
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 1.8e-211 739.6 552 65.0
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 6.8e-211 737.6 550 64.7
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 8.8e-211 737.3 546 65.8
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 4.4e-210 734.9 547 66.0
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 2.8e-209 732.3 547 66.0
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 4.9e-209 731.5 549 63.8
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 1.4e-208 729.9 550 65.6
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.4e-208 729.2 567 66.1
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 2.4e-208 729.2 543 64.6
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.4e-208 729.2 550 64.2
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 4.1e-208 728.4 544 64.7
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 1.2e-207 726.9 546 66.1
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 3.5e-207 725.3 551 65.2
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.5e-207 725.3 551 65.0
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.5e-207 724.9 551 65.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.5e-207 724.9 551 65.0
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.7e-206 723.0 551 65.3
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 3.8e-206 721.8 568 64.3
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.9e-205 719.5 542 64.4
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 2.5e-205 719.2 552 63.6
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.8e-204 715.7 551 63.7
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 4.7e-204 714.9 551 64.6
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 1.8e-203 713.0 551 63.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-202 709.9 552 64.1
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 9.8e-202 707.2 576 61.1
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 1.7e-201 706.4 550 62.2
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 1.1e-200 703.7 560 63.4
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.8e-200 703.0 550 62.5
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 1.0e-198 697.2 552 61.8
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 6.6e-198 694.5 552 61.6
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 1.2e-196 690.3 552 61.4
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 8.0e-196 687.6 505 68.3
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 8.0e-196 687.6 552 60.5
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 6.8e-195 684.5 545 62.6
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 1.5e-194 683.3 552 62.0
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 3.4e-194 682.2 559 62.8
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.9e-193 679.1 552 58.9
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 3.7e-193 678.7 419 80.0
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.1e-192 677.2 538 62.3
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.1e-192 677.2 547 60.9
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.2e-191 673.7 587 56.7
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 6.6e-190 667.9 549 57.9
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 4.3e-189 665.2 549 60.1
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.6e-188 663.3 552 59.6
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 2.1e-188 662.9 549 60.3
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 6.2e-188 661.4 543 58.4
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.2e-186 657.1 547 60.5
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 4.9e-185 651.7 549 58.7
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 6.4e-185 651.4 546 59.7
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.0e-183 644.8 543 59.7
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 6.0e-183 644.8 548 59.7
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.7e-182 643.3 550 58.0
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 5.1e-182 641.7 547 59.8
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 8.6e-182 641.0 556 58.3
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 1.6e-180 636.7 549 59.2
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 6.2e-180 634.8 559 58.1
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 6.2e-180 634.8 559 58.1
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 6.2e-180 634.8 559 58.1
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 3.1e-179 632.5 555 57.8
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 4.4e-170 602.1 521 56.0
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.5e-165 587.0 547 54.1
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 4.8e-164 582.0 540 54.4
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 6.0e-159 565.1 549 51.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 3.3e-157 559.3 418 67.0
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 2.2e-153 546.6 420 65.0
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 6.4e-153 545.0 581 48.5
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 3.3e-149 532.7 595 49.2
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.8e-148 529.6 550 48.5
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 8.1e-148 528.1 552 51.4
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 4.0e-147 525.8 552 51.4
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 2.5e-141 506.5 557 45.6
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.7e-113 414.1 559 43.3
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.4e-110 404.4 263 74.9
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 8.8e-102 375.2 274 66.8
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.2e-98 364.8 341 54.3
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 1.7e-97 360.9 296 61.1
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.8e-89 333.2 218 70.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.9e-73 280.0 228 59.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-72 278.1 215 65.6
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.5e-69 268.1 196 73.0
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.9e-68 263.8 196 71.9
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 8.3e-68 262.3 221 59.3
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.1e-67 260.0 196 71.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 8.6e-57 225.7 553 28.8
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 6.2e-47 193.0 136 64.7
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 6.2e-47 193.0 130 69.2
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 5.8e-45 186.4 206 43.7
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 5.6e-40 169.9 130 62.3
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 2.1e-39 167.9 164 47.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 8.1e-39 166.0 134 62.7
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.7e-36 158.3 122 60.7
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.9e-36 157.5 477 25.8
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.9e-35 154.8 114 59.6
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 4.6e-34 150.2 126 57.1
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 3.1e-30 137.5 453 23.0
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 2.4e-22 111.3 83 60.2
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 9.0e-22 109.4 83 59.0
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.8e-20 104.0 368 26.6
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.1e-16 92.4 77 58.4
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 5.9e-13 80.1 58 67.2
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.7e-12 78.6 58 65.5
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 7.2e-11 73.2 56 64.3
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.1e-10 71.6 231 24.7
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 3.6e-10 70.9 54 55.6
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 4.7e-10 70.5 51 56.9
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 8.8e-09 66.2 85 43.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 5.7e-08 63.5 65 49.2
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.7e-07 62.0 45 66.7
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 6.9e-06 56.6 37 62.2
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.9e-06 56.6 53 50.9


User provided reference genes

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