Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 0.0e+00 1330.5 679 100.0
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 8.0e-246 854.0 683 67.9
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 4.4e-244 848.2 697 66.6
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.3e-227 793.5 695 63.2
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 1.2e-225 786.9 696 63.6
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.5e-225 785.0 682 63.0
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 5.6e-223 778.1 635 65.8
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 1.2e-220 770.4 701 61.3
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 3.3e-215 752.3 701 57.9
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.0e-212 743.0 678 60.2
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 2.0e-212 743.0 682 61.0
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 2.2e-211 739.6 695 58.7
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.0e-208 730.7 691 59.5
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 3.6e-206 722.2 685 58.5
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.7e-206 721.8 703 59.6
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 6.2e-206 721.5 690 58.8
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 8.1e-206 721.1 700 56.7
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.4e-202 710.3 681 58.1
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 2.1e-201 706.4 695 57.1
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 2.7e-201 706.1 737 55.9
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 3.5e-201 705.7 703 59.0
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 9.5e-199 697.6 672 57.4
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.6e-198 696.8 716 56.0
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 3.6e-198 695.7 862 47.9
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 8.1e-198 694.5 703 58.5
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.8e-197 693.3 604 65.2
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 3.4e-196 689.1 696 56.9
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 9.9e-196 687.6 579 63.7
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.9e-194 683.3 732 54.1
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 2.4e-194 682.9 690 56.7
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 3.2e-194 682.6 682 56.2
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 4.2e-194 682.2 680 56.9
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 2.3e-192 676.4 763 53.7
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 3.0e-192 676.0 679 57.0
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.1e-190 669.8 698 57.2
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 2.8e-190 669.5 697 56.2
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 5.3e-189 665.2 683 54.9
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 2.6e-188 662.9 692 53.3
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 4.4e-188 662.1 687 55.2
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 2.2e-187 659.8 672 56.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.9e-187 658.7 694 55.3
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 6.4e-187 658.3 681 54.3
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 1.2e-185 654.1 691 53.5
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.2e-185 654.1 689 53.6
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.2e-185 654.1 685 56.9
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 2.7e-185 652.9 678 55.5
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.0e-184 651.0 696 55.0
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 3.3e-183 646.0 701 53.5
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 4.3e-183 645.6 666 55.4
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 5.6e-183 645.2 689 54.3
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 2.1e-182 643.3 693 54.8
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 3.6e-182 642.5 670 54.9
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 2.4e-181 639.8 673 55.1
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 9.0e-181 637.9 688 54.2
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 9.0e-181 637.9 689 53.8
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 1.5e-180 637.1 710 53.1
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 3.4e-180 636.0 694 52.7
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 3.4e-180 636.0 677 54.8
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 9.9e-180 634.4 687 54.1
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 1.3e-179 634.0 692 54.2
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 8.4e-179 631.3 666 54.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 3.2e-178 629.4 668 52.5
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 9.3e-178 627.9 700 54.4
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.8e-176 623.6 701 53.4
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 5.1e-176 622.1 688 53.9
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.5e-175 620.5 693 53.8
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 3.3e-175 619.4 671 53.7
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 6.2e-174 615.1 678 54.7
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.2e-174 615.1 701 53.6
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.4e-173 613.2 700 53.9
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 5.8e-172 608.6 695 53.7
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.3e-171 607.4 657 54.9
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.9e-171 606.3 696 53.7
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 6.5e-171 605.1 622 55.8
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.1e-170 604.4 694 52.7
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 7.9e-169 598.2 674 54.6
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 2.3e-168 596.7 681 52.3
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.5e-167 594.0 732 50.1
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.9e-167 593.6 622 54.5
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 5.7e-167 592.0 675 50.8
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 1.2e-161 574.3 672 50.0
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.5e-161 572.8 648 52.3
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 1.3e-160 570.9 710 49.4
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 7.4e-159 565.1 731 48.8
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 9.7e-159 564.7 672 50.6
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.1e-157 561.2 671 49.2
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.1e-157 561.2 668 49.3
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 9.0e-157 558.1 670 50.1
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 9.0e-157 558.1 706 48.7
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.2e-156 557.8 678 50.6
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 3.8e-155 552.7 671 50.2
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 5.5e-154 548.9 669 49.6
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 9.4e-154 548.1 678 48.4
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 1.6e-153 547.4 667 48.1
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 3.6e-153 546.2 583 53.0
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.4e-152 544.3 601 52.1
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 2.3e-152 543.5 674 49.1
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 5.1e-152 542.3 674 49.0
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 4.1e-149 532.7 672 48.5
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.5e-148 530.8 639 50.5
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 5.9e-148 528.9 668 49.7
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 2.9e-147 526.6 668 49.7
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 3.2e-146 523.1 631 49.4
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 4.2e-146 522.7 668 49.1
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.2e-146 521.9 668 47.3
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.6e-145 520.8 675 49.8
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 2.0e-143 513.8 676 49.4
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 6.3e-142 508.8 674 48.5
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 1.0e-136 491.5 637 48.0
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 7.7e-132 475.3 599 47.2
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 7.7e-132 475.3 683 46.1
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 2.7e-129 466.8 673 44.7
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.2e-127 461.5 672 43.2
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.0e-123 448.4 764 41.8
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.8e-117 427.6 504 51.2
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 3.8e-115 419.9 666 42.5
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 6.1e-113 412.5 620 43.5
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.5e-98 364.8 411 52.1
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.6e-92 344.7 736 35.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.4e-85 321.6 589 39.4
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 6.6e-83 312.8 678 35.8
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 1.4e-77 295.0 649 34.1
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 2.1e-76 291.2 661 34.8
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 1.9e-66 258.1 705 31.9
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.9e-61 241.5 192 67.7
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.2e-61 240.4 314 47.5
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.0e-51 207.6 230 49.1
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.3e-50 204.1 183 61.2
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.4e-48 198.0 226 50.0
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 1.9e-42 178.3 724 27.9
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 1.5e-39 168.7 99 85.9
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 3.4e-39 167.5 494 30.8
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 3.4e-31 141.0 118 61.9
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 2.8e-25 121.3 132 53.0
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.4e-24 119.0 105 56.2
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 5.3e-24 117.1 663 25.5
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 1.9e-13 82.0 186 33.9
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.9e-13 82.0 80 55.0
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 1.5e-10 72.4 117 40.2
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 1.5e-10 72.4 117 40.2
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 1.5e-10 72.4 117 40.2
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 6.3e-09 67.0 59 54.2
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.4e-08 63.9 88 48.9
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 7.0e-08 63.5 116 40.5
CSS0012295 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 7.7e-07 60.1 94 42.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 3.8e-06 57.8 63 42.9


User provided reference genes

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