Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 1.6e-219 765.8 387 100.0
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 2.7e-182 642.1 356 91.3
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 9.1e-146 520.8 374 69.0
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 9.6e-95 351.3 192 88.5
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 1.1e-93 347.8 274 66.8
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 9.0e-93 344.7 274 66.1
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 1.5e-92 344.0 189 88.9
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 4.4e-92 342.4 192 84.4
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 5.8e-92 342.0 274 66.4
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 1.7e-91 340.5 190 84.7
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 2.2e-91 340.1 274 66.4
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 2.9e-91 339.7 279 64.5
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 2.9e-91 339.7 199 83.4
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 2.9e-91 339.7 192 85.9
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 3.8e-91 339.3 199 83.4
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 3.8e-91 339.3 192 84.9
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 4.9e-91 339.0 194 82.5
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 6.4e-91 338.6 190 86.8
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 8.4e-91 338.2 190 87.9
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 8.4e-91 338.2 199 83.4
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 8.4e-91 338.2 192 83.9
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 1.1e-90 337.8 194 84.0
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 1.1e-90 337.8 192 83.9
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 1.4e-90 337.4 194 83.5
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 1.9e-90 337.0 190 86.3
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 3.2e-90 336.3 276 64.9
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 1.6e-89 334.0 305 59.7
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 1.6e-89 334.0 194 81.4
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 2.1e-89 333.6 192 82.8
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 2.7e-89 333.2 276 62.3
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 3.5e-89 332.8 192 83.3
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 6.0e-89 332.0 274 65.0
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 1.0e-88 331.3 279 63.1
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 1.0e-88 331.3 190 82.6
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 1.3e-88 330.9 186 86.0
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 2.3e-88 330.1 190 82.6
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 3.9e-88 329.3 190 85.8
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 8.7e-88 328.2 186 86.6
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 1.5e-87 327.4 194 81.4
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 2.5e-87 326.6 203 82.3
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 3.3e-87 326.2 193 81.9
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 4.3e-87 325.9 194 78.9
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 4.3e-87 325.9 194 80.9
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 4.3e-87 325.9 274 62.0
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 5.6e-87 325.5 192 81.2
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 7.3e-87 325.1 188 81.9
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 1.3e-86 324.3 194 78.4
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 1.3e-86 324.3 194 79.4
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 1.6e-86 323.9 193 79.8
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 2.8e-86 323.2 192 81.2
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 3.6e-86 322.8 193 79.3
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 3.6e-86 322.8 187 80.7
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 8.1e-86 321.6 194 77.8
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 1.4e-85 320.9 275 60.4
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 1.8e-85 320.5 275 60.4
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 2.4e-85 320.1 182 83.5
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 3.1e-85 319.7 181 84.5
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 3.1e-85 319.7 184 82.1
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 4.0e-85 319.3 192 79.7
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 6.9e-85 318.5 186 83.9
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 2.0e-84 317.0 185 81.1
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 2.6e-84 316.6 187 81.3
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 2.6e-84 316.6 189 78.8
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 3.4e-84 316.2 193 79.3
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 7.6e-84 315.1 190 79.5
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 7.6e-84 315.1 192 80.2
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 9.9e-84 314.7 190 80.0
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 9.9e-84 314.7 190 80.0
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 9.9e-84 314.7 190 80.0
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 9.9e-84 314.7 190 80.0
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 1.3e-83 314.3 190 80.0
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 1.3e-83 314.3 190 79.5
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 1.7e-83 313.9 190 77.4
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 1.7e-83 313.9 188 78.2
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 2.2e-83 313.5 190 79.5
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 2.2e-83 313.5 194 75.3
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 2.9e-83 313.2 190 77.4
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 2.9e-83 313.2 179 84.4
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 6.4e-83 312.0 190 79.5
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 1.1e-82 311.2 185 81.1
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 2.4e-82 310.1 190 78.9
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 2.1e-81 307.0 185 78.9
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 1.3e-80 304.3 182 79.7
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 3.9e-80 302.8 181 81.2
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 6.7e-80 302.0 274 62.8
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 2.8e-78 296.6 191 74.9
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 9.9e-76 288.1 190 76.3
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 1.3e-75 287.7 189 70.9
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 3.8e-75 286.2 189 71.4
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 3.2e-74 283.1 185 77.8
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 6.0e-73 278.9 339 49.3
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 7.9e-73 278.5 193 68.4
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 2.5e-71 273.5 187 69.0
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 2.1e-70 270.4 310 51.3
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 3.4e-68 263.1 152 83.6
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 6.5e-59 232.3 133 84.2
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 2.5e-58 230.3 130 80.8
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 6.3e-54 215.7 126 81.0
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 2.6e-52 210.3 240 51.2
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 1.0e-51 208.4 174 62.6
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 6.5e-51 205.7 339 41.0
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 2.0e-44 184.1 126 68.3
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 6.5e-43 179.1 106 82.1
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 9.7e-39 165.2 217 42.4
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 4.1e-37 159.8 179 48.6
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 4.1e-37 159.8 96 84.4
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 3.5e-36 156.8 94 73.4
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 6.5e-35 152.5 84 84.5
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 2.3e-32 144.1 209 38.8
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 3.0e-32 143.7 182 48.4
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 6.3e-30 136.0 189 43.4
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 8.5e-27 125.6 93 63.4
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 5.5e-26 122.9 104 58.7
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 2.7e-25 120.6 65 86.2
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 5.7e-15 86.3 55 83.6
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 1.2e-09 68.6 44 63.6
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 1.7e-06 58.2 54 55.6
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 8.3e-06 55.8 30 83.3


User provided reference genes

Program Settings