Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0074F.1_g038990 Hydrangea macrophylla HOM05D006413 ORTHO05D007722 9.9e-130 466.8 244 100.0
Dinv34265 Davidia involucrata HOM05D006413 ORTHO05D007722 2.2e-36 156.8 206 48.1
vmacro12628 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 2.8e-31 139.8 242 43.8
Actinidia28080 Actinidia chinensis HOM05D006413 ORTHO05D007722 8.0e-31 138.3 216 43.1
CSS0026125 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 7.5e-29 131.7 147 53.7
CSS0033391 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.9e-28 129.8 147 53.1
GSVIVG01027488001 Vitis vinifera HOM05D006413 ORTHO05D007722 6.0e-26 122.1 251 36.3
Rhsim01G0182400 Rhododendron simsii HOM05D006413 ORTHO05D007722 4.3e-24 115.9 220 41.4
MBI12_g23070_MAGBIO Magnolia biondii HOM05D006413 ORTHO05D007722 2.8e-23 113.2 147 46.9
TAR629G2159 Trochodendron aralioides HOM05D006413 ORTHO05D007722 4.7e-23 112.5 208 37.5
Oeu059793.1 Olea europaea HOM05D006413 ORTHO05D007722 5.2e-22 109.0 213 35.7
Nn1g00502 Nelumbo nucifera HOM05D006413 ORTHO05D007722 7.5e-21 105.1 96 61.5
Cc11_g00050 Coffea canephora HOM05D006413 ORTHO05D007722 1.4e-19 100.9 210 38.1
Lsat_1_v5_gn_5_42660 Lactuca sativa HOM05D006413 ORTHO05D007722 1.9e-19 100.5 104 50.0
Atru.chr5.817 Acer truncatum HOM05D006413 ORTHO05D007722 5.4e-19 99.0 243 39.1
Sabra02G0131800 Salix brachista HOM05D006413 ORTHO05D007722 1.2e-18 97.8 123 50.4
Potri.002G183900 Populus trichocarpa HOM05D006413 ORTHO05D007722 2.1e-18 97.1 232 36.6
CiPaw.02G050700 Carya illinoinensis HOM05D006413 ORTHO05D007722 3.5e-18 96.3 226 37.2
ECA246G2509 Erigeron canadensis HOM05D006413 ORTHO05D007722 1.0e-17 94.7 108 50.9
HanXRQChr12g0379901 Helianthus annuus HOM05D006413 ORTHO05D007722 6.6e-17 92.0 69 60.9
SEGI_13405 Sequoiadendron giganteum HOM05D006413 ORTHO05D007722 8.6e-17 91.7 74 56.8
Thecc.01G329000 Theobroma cacao HOM05D006413 ORTHO05D007722 1.1e-16 91.3 257 33.9
MSTRG.12126 Avicennia marina HOM05D006413 ORTHO05D007722 3.3e-16 89.7 73 65.8
QL05p084380 Quercus lobata HOM05D006413 ORTHO05D007722 5.6e-16 89.0 124 45.2
CDE12G0027 Ceratophyllum demersum HOM05D006413 ORTHO05D007722 7.3e-16 88.6 80 56.2
CANSAT01G2278 Cannabis sativa HOM05D006413 ORTHO05D007722 1.2e-15 87.8 211 36.5
Sopen03g012060 Solanum pennellii HOM05D006413 ORTHO05D007722 1.2e-15 87.8 90 52.2
Nitab4.5_0000911g0040 Nicotiana tabacum HOM05D006413 ORTHO05D007722 1.6e-15 87.4 90 53.3
HPP92_025405 Vanilla planifolia HOM05D006413 ORTHO05D007722 1.6e-15 87.4 140 35.0
Lj5g0015604 Lotus japonicus HOM05D006413 ORTHO05D007722 2.1e-15 87.0 106 52.8
Medtr2g101420 Medicago truncatula HOM05D006413 ORTHO05D007722 2.1e-15 87.0 132 40.9
Duzib138G1460 Durio zibethinus HOM05D006413 ORTHO05D007722 3.6e-15 86.3 247 36.0
Nitab4.5_0000001g0010 Nicotiana tabacum HOM05D006413 ORTHO05D007722 3.6e-15 86.3 90 52.2
Gohir.D12G122400 Gossypium hirsutum HOM05D006413 ORTHO05D007722 4.7e-15 85.9 145 44.1
Gorai.008G133200 Gossypium raimondii HOM05D006413 ORTHO05D007722 4.7e-15 85.9 145 44.1
Sc26g0002030 Simmondsia chinensis HOM05D006413 ORTHO05D007722 4.7e-15 85.9 103 51.5
Migut.G00788 Erythranthe guttata HOM05D006413 ORTHO05D007722 6.2e-15 85.5 199 36.2
Lj3g0007654 Lotus japonicus HOM05D006413 ORTHO05D007722 6.2e-15 85.5 106 51.9
AT2G46915 Arabidopsis thaliana HOM05D006413 ORTHO05D007722 8.1e-15 85.1 114 47.4
VMungo1080G0934 Vigna mungo HOM05D006413 ORTHO05D007722 8.1e-15 85.1 107 49.5
arahy.Tifrunner.gnm1.ann1.JWHJ24 Arachis hypogaea HOM05D006413 ORTHO05D007722 1.1e-14 84.7 137 43.8
Cpa.g.sc57.58 Carica papaya HOM05D006413 ORTHO05D007722 1.4e-14 84.3 143 39.9
SGA_v2.0_scaffold12G06253 Striga asiatica HOM05D006413 ORTHO05D007722 1.4e-14 84.3 77 62.3
TWI14G0709 Tripterygium wilfordii HOM05D006413 ORTHO05D007722 1.8e-14 84.0 133 46.6
DCAR_001546 Daucus carota HOM05D006413 ORTHO05D007722 2.3e-14 83.6 120 45.0
Gohir.A12G118600 Gossypium hirsutum HOM05D006413 ORTHO05D007722 2.3e-14 83.6 145 43.4
Phvul.005G185400 Phaseolus vulgaris HOM05D006413 ORTHO05D007722 2.3e-14 83.6 112 47.3
RcHm_v2.0_Chr2g0149491 Rosa chinensis HOM05D006413 ORTHO05D007722 2.3e-14 83.6 143 39.9
FAN14G2652 Fragaria x ananassa HOM05D006413 ORTHO05D007722 3.1e-14 83.2 226 33.6
Aa31LG1G28280 Aethionema arabicum HOM05D006413 ORTHO05D007722 4.0e-14 82.8 80 55.0
FvH4_6g36970 Fragaria vesca HOM05D006413 ORTHO05D007722 4.0e-14 82.8 226 33.6
Carub.0004s2964 Capsella rubella HOM05D006413 ORTHO05D007722 5.2e-14 82.4 81 54.3
Pp3c4_17360 Physcomitrium patens HOM05D006413 ORTHO05D007722 5.2e-14 82.4 128 38.3
ClCG09G001640 Citrullus lanatus HOM05D006413 ORTHO05D007722 8.9e-14 81.6 83 53.0
FAN02G2312 Fragaria x ananassa HOM05D006413 ORTHO05D007722 8.9e-14 81.6 225 34.7
MD05G1207200 Malus domestica HOM05D006413 ORTHO05D007722 8.9e-14 81.6 199 34.7
MD17G1162400 Malus domestica HOM05D006413 ORTHO05D007722 8.9e-14 81.6 199 34.7
Manes.01G237000 Manihot esculenta HOM05D006413 ORTHO05D007722 1.2e-13 81.3 175 40.6
BcaC02g12635 Brassica carinata HOM05D006413 ORTHO05D007722 2.0e-13 80.5 105 43.8
A05p00920 Brassica napus HOM05D006413 ORTHO05D007722 2.0e-13 80.5 122 40.2
Cfa002153 Carpinus fangiana HOM05D006413 ORTHO05D007722 2.0e-13 80.5 164 39.0
FAN09G4880 Fragaria x ananassa HOM05D006413 ORTHO05D007722 2.0e-13 80.5 226 33.6
THA.LOC104802107 Tarenaya hassleriana HOM05D006413 ORTHO05D007722 2.0e-13 80.5 79 55.7
CARHR142270 Cardamine hirsuta HOM05D006413 ORTHO05D007722 2.6e-13 80.1 88 51.1
TPR.G31784 Trifolium pratense HOM05D006413 ORTHO05D007722 3.4e-13 79.7 126 40.5
Thhalv10001331m.g Eutrema salsugineum HOM05D006413 ORTHO05D007722 4.4e-13 79.3 100 48.0
Glyma.13G372900 Glycine max HOM05D006413 ORTHO05D007722 4.4e-13 79.3 71 57.7
PGR042G2300 Punica granatum HOM05D006413 ORTHO05D007722 4.4e-13 79.3 89 50.6
Sp4g28940 Schrenkiella parvula HOM05D006413 ORTHO05D007722 4.4e-13 79.3 92 55.4
AL4G46380 Arabidopsis lyrata HOM05D006413 ORTHO05D007722 5.8e-13 79.0 79 51.9
CsaV3_7G033700 Cucumis sativus L. HOM05D006413 ORTHO05D007722 7.5e-13 78.6 109 45.9
Aqoxy5G04399 Aquilegia oxysepala HOM05D006413 ORTHO05D007722 9.9e-13 78.2 72 59.7
BraA05t19093Z Brassica rapa HOM05D006413 ORTHO05D007722 9.9e-13 78.2 120 40.0
Psat5g305280 Pisum sativum HOM05D006413 ORTHO05D007722 1.7e-12 77.4 88 51.1
MELO3C024283.2 Cucumis melo HOM05D006413 ORTHO05D007722 2.2e-12 77.0 163 33.7
EL10Ac1g00655 Beta vulgaris HOM05D006413 ORTHO05D007722 2.9e-12 76.6 74 56.8
Prupe.3G022900 Prunus persica HOM05D006413 ORTHO05D007722 2.9e-12 76.6 248 33.9
Ca_00994_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 3.7e-12 76.3 105 44.8
BolC4t21760H Brassica oleracea HOM05D006413 ORTHO05D007722 4.9e-12 75.9 106 42.5
COL.COLO4_23085 Corchorus olitorius HOM05D006413 ORTHO05D007722 4.9e-12 75.9 170 37.1
C04p01070 Brassica napus HOM05D006413 ORTHO05D007722 6.4e-12 75.5 129 38.0
Eucgr.E00011 Eucalyptus grandis HOM05D006413 ORTHO05D007722 6.4e-12 75.5 118 40.7
AUR62014504 Chenopodium quinoa HOM05D006413 ORTHO05D007722 1.9e-11 73.9 86 50.0
AUR62038031 Chenopodium quinoa HOM05D006413 ORTHO05D007722 4.1e-11 72.8 124 38.7
Ah.05g177080 Amaranthus hybridus HOM05D006413 ORTHO05D007722 5.4e-11 72.4 173 34.7
CAN.G317.7 Capsicum annuum HOM05D006413 ORTHO05D007722 1.6e-10 70.9 102 45.1
Hund26914 Selenicereus undatus HOM05D006413 ORTHO05D007722 2.7e-10 70.1 152 35.5
Glyma.19G019600 Glycine max HOM05D006413 ORTHO05D007722 1.3e-09 67.8 60 58.3
Os06g0104000 Oryza sativa ssp. japonica HOM05D006413 ORTHO05D007722 1.3e-09 67.8 76 47.4
Lalb_Chr24g0392741 Lupinus albus HOM05D006413 ORTHO05D007722 1.9e-08 63.9 65 50.8
Zm00001eb268520 Zea mays HOM05D006413 ORTHO05D007722 5.6e-08 62.4 186 33.9


User provided reference genes

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