Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 3.0e-27 124.4 62 100.0
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 3.7e-25 117.5 60 96.7
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 1.7e-22 108.6 60 86.7
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 3.9e-22 107.5 60 86.7
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 5.0e-22 107.1 59 86.4
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 5.0e-22 107.1 60 85.0
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 8.6e-22 106.3 60 83.3
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.5e-21 105.5 62 83.9
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 1.5e-21 105.5 60 85.0
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.5e-21 105.5 60 83.3
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.5e-21 105.5 60 85.0
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 1.9e-21 105.1 60 85.0
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 5.6e-21 103.6 60 83.3
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 5.6e-21 103.6 62 82.3
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 5.6e-21 103.6 62 82.3
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 5.6e-21 103.6 60 83.3
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 7.3e-21 103.2 60 83.3
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.3e-21 103.2 62 82.3
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 7.3e-21 103.2 60 81.7
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 9.5e-21 102.8 60 81.7
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 1.2e-20 102.4 62 80.6
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 1.6e-20 102.1 62 82.3
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 2.8e-20 101.3 60 80.0
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 3.6e-20 100.9 62 80.6
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 3.6e-20 100.9 62 80.6
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 4.7e-20 100.5 62 82.3
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 6.2e-20 100.1 62 79.0
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 6.2e-20 100.1 60 80.0
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 8.0e-20 99.8 62 77.4
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 8.0e-20 99.8 61 78.7
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 8.0e-20 99.8 62 77.4
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.0e-19 99.4 62 80.6
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 1.0e-19 99.4 60 81.7
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 1.4e-19 99.0 62 77.4
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 1.4e-19 99.0 62 77.4
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.4e-19 99.0 61 83.6
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 1.4e-19 99.0 60 81.7
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.4e-19 99.0 63 77.8
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 1.4e-19 99.0 60 83.3
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 1.8e-19 98.6 62 79.0
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.8e-19 98.6 60 80.0
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 1.8e-19 98.6 62 79.0
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 2.3e-19 98.2 62 77.4
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 2.3e-19 98.2 61 80.3
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 3.1e-19 97.8 59 76.3
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 3.1e-19 97.8 60 80.0
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 4.0e-19 97.4 60 80.0
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 5.2e-19 97.1 62 77.4
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 5.2e-19 97.1 67 71.6
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 6.8e-19 96.7 61 75.4
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 8.9e-19 96.3 62 77.4
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 8.9e-19 96.3 62 77.4
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 8.9e-19 96.3 62 77.4
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 8.9e-19 96.3 62 75.8
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 8.9e-19 96.3 61 75.4
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 8.9e-19 96.3 62 77.4
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 8.9e-19 96.3 60 78.3
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 1.2e-18 95.9 62 77.4
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 1.2e-18 95.9 60 76.7
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 2.0e-18 95.1 61 78.7
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 2.0e-18 95.1 61 78.7
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 2.0e-18 95.1 60 73.3
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 2.6e-18 94.7 67 70.1
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 2.6e-18 94.7 60 73.3
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 3.4e-18 94.4 60 80.0
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 3.4e-18 94.4 60 75.0
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 5.8e-18 93.6 60 73.3
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 5.8e-18 93.6 59 74.6
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 7.5e-18 93.2 61 72.1
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 9.8e-18 92.8 59 76.3
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 1.3e-17 92.4 59 76.3
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 2.9e-17 91.3 60 78.3
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 2.9e-17 91.3 57 77.2
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 2.9e-17 91.3 61 75.4
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 3.7e-17 90.9 63 71.4
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 8.3e-17 89.7 56 76.8
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 8.3e-17 89.7 60 68.3
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 1.1e-16 89.4 56 78.6
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 3.2e-16 87.8 56 69.6
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 2.0e-15 85.1 55 80.0
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 4.6e-15 84.0 60 70.0
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 8.6e-14 79.7 57 71.9
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 5.6e-13 77.0 39 89.7
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 9.5e-13 76.3 46 80.4
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 9.5e-13 76.3 61 62.3
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 1.2e-12 75.9 39 89.7
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 5.8e-10 67.0 62 54.8
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 1.9e-08 62.0 68 48.5
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 6.0e-07 57.0 69 43.5


User provided reference genes

Program Settings