Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 2.4e-62 242.7 192 100.0
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.8e-28 129.0 200 58.5
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 6.5e-28 128.3 202 54.0
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 1.3e-23 114.0 200 44.0
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 8.3e-23 111.3 194 51.5
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 1.1e-22 110.9 195 58.5
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 1.6e-21 107.1 213 52.1
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 7.7e-21 104.8 229 47.2
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 5.0e-20 102.1 193 61.1
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 1.9e-19 100.1 226 47.3
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.6e-18 97.1 192 55.2
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 2.8e-18 96.3 192 54.7
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 4.0e-17 92.4 217 53.9
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 4.0e-17 92.4 208 43.3
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 5.2e-17 92.0 210 48.1
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 4.4e-16 89.0 220 51.4
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 9.8e-16 87.8 201 45.3
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 1.7e-15 87.0 214 53.7
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.4e-14 84.0 223 49.8
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.8e-14 83.6 220 49.1
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 1.8e-14 83.6 255 44.3
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 2.4e-14 83.2 254 46.5
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 2.4e-14 83.2 230 47.0
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.2e-13 80.9 212 47.2
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.6e-13 80.5 197 39.6
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.0e-13 80.1 190 48.4
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 3.5e-13 79.3 184 45.7
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.5e-13 79.3 198 46.0
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 4.5e-13 79.0 207 49.3
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 4.5e-13 79.0 219 56.6
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 4.5e-13 79.0 209 56.9
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 4.5e-13 79.0 204 44.1
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 7.8e-13 78.2 199 51.3
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 2.3e-12 76.6 193 40.9
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 2.3e-12 76.6 210 61.0
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 2.9e-12 76.3 216 39.8
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 3.8e-12 75.9 237 49.4
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 3.8e-12 75.9 200 56.0
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 5.0e-12 75.5 219 53.9
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 5.0e-12 75.5 208 42.8
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.1e-11 74.3 214 58.4
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 1.5e-11 73.9 207 58.9
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.5e-11 73.9 214 54.7
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 1.9e-11 73.6 200 44.5
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 3.3e-11 72.8 221 58.4
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 5.6e-11 72.0 52 69.2
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 5.6e-11 72.0 195 46.7
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 7.3e-11 71.6 197 44.2
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.2e-10 70.9 137 39.4
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 1.6e-10 70.5 198 48.0
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 3.6e-10 69.3 60 58.3
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 3.6e-10 69.3 193 50.8
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 6.1e-10 68.6 29 86.2
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.4e-09 67.4 243 34.2
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 1.8e-09 67.0 227 44.9
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 5.2e-09 65.5 177 48.0
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 6.8e-09 65.1 54 64.8
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 8.9e-09 64.7 193 51.3
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 8.9e-09 64.7 29 79.3
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 1.2e-08 64.3 60 55.0
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 1.2e-08 64.3 216 50.9
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.0e-08 63.5 29 82.8
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 2.0e-08 63.5 29 82.8
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 2.6e-08 63.2 241 43.2
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 4.4e-08 62.4 219 44.3
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 4.4e-08 62.4 29 72.4
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 5.8e-08 62.0 29 75.9
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.8e-08 62.0 29 72.4
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 5.8e-08 62.0 189 44.4
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 7.5e-08 61.6 224 34.8
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 1.7e-07 60.5 194 47.9
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 2.2e-07 60.1 29 75.9
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 3.7e-07 59.3 30 73.3
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 3.7e-07 59.3 192 52.6
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 4.9e-07 58.9 29 65.5
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 6.4e-07 58.5 221 48.0
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 6.4e-07 58.5 30 76.7
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 6.4e-07 58.5 30 76.7
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 8.3e-07 58.2 60 53.3
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 8.3e-07 58.2 228 36.8
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 8.3e-07 58.2 208 43.8
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 1.1e-06 57.8 94 51.1
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 1.4e-06 57.4 30 73.3
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.4e-06 57.4 36 63.9
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 1.4e-06 57.4 30 73.3
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 1.9e-06 57.0 93 58.1
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 3.2e-06 56.2 28 71.4
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 3.2e-06 56.2 136 46.3
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.2e-06 56.2 29 69.0
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 4.1e-06 55.8 162 48.1
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 9.2e-06 54.7 60 48.3
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 9.2e-06 54.7 30 70.0
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 9.2e-06 54.7 28 67.9


User provided reference genes

Program Settings