Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 3.7e-272 941.0 512 100.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.8e-205 719.5 485 82.7
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 2.0e-201 706.1 510 79.0
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 5.2e-197 691.4 484 79.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.5e-196 689.9 483 78.3
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 3.7e-195 685.3 516 75.0
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 6.3e-195 684.5 497 76.5
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.4e-194 683.3 512 74.2
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 4.1e-194 681.8 503 75.1
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 9.1e-194 680.6 484 77.9
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 7.7e-193 677.6 485 78.4
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.0e-192 677.2 486 77.2
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.9e-192 675.6 515 72.8
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.9e-192 675.6 485 77.1
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 5.0e-192 674.9 512 73.6
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 6.5e-192 674.5 485 77.3
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.1e-191 673.7 487 76.6
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.5e-191 673.3 486 76.5
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.9e-191 672.9 484 76.4
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.5e-191 672.5 486 76.5
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 3.2e-191 672.2 510 74.7
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 4.2e-191 671.8 485 77.9
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 5.5e-191 671.4 483 76.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 7.2e-191 671.0 486 76.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 9.4e-191 670.6 483 77.0
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.6e-190 669.8 486 75.9
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 4.7e-190 668.3 486 76.7
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 8.0e-190 667.5 510 73.9
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.0e-189 667.2 468 77.8
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.0e-189 665.2 511 74.2
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.2e-188 663.7 484 76.2
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.5e-188 663.3 505 73.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 7.5e-188 661.0 505 73.1
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 6.3e-187 657.9 483 74.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.8e-186 656.4 485 73.8
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.8e-186 656.4 500 73.4
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.1e-186 655.6 482 74.3
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.1e-186 655.6 502 73.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 5.4e-186 654.8 480 76.0
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 9.1e-186 654.1 510 72.0
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 7.7e-185 651.0 502 72.9
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.0e-184 650.6 512 71.7
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.9e-184 649.0 505 72.1
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.1e-183 647.1 492 74.6
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-183 646.4 503 72.4
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.2e-183 645.6 512 71.5
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.5e-183 644.8 484 74.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.5e-183 644.8 486 73.9
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.2e-182 643.7 423 82.7
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.6e-182 643.3 513 71.7
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-182 643.3 486 73.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.1e-182 642.9 492 74.0
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 3.6e-182 642.1 507 71.6
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.1e-182 641.3 513 71.0
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 6.1e-182 641.3 500 72.2
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.0e-181 640.6 510 71.2
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.4e-181 640.2 496 73.8
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.5e-180 636.7 509 70.7
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.5e-180 636.7 511 73.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-179 633.6 484 73.6
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.7e-179 633.3 483 71.2
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-178 630.2 492 72.2
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-178 629.8 480 73.8
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 4.1e-178 628.6 483 73.5
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.3e-176 623.6 491 71.3
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.3e-176 622.9 511 69.7
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.9e-176 622.5 484 72.9
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 8.6e-176 620.9 507 70.8
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.9e-175 619.8 515 67.4
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.5e-175 619.4 483 70.0
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.3e-175 618.6 483 72.5
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.2e-174 617.1 483 70.6
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.8e-174 615.9 483 70.4
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.8e-174 615.9 511 67.7
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.8e-174 615.9 506 69.8
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.6e-174 615.5 483 70.2
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 4.7e-174 615.1 496 70.4
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 4.7e-174 615.1 510 69.2
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 4.7e-174 615.1 484 72.1
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.8e-173 613.2 500 69.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 4.0e-173 612.1 483 69.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 4.0e-173 612.1 483 69.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 5.2e-173 611.7 488 70.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.2e-172 610.5 523 67.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-172 610.1 485 69.1
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.5e-172 610.1 488 70.3
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.5e-172 610.1 469 71.4
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 8.3e-171 604.4 514 67.3
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.1e-170 604.0 486 68.5
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.7e-168 596.7 509 65.2
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 3.0e-168 595.9 485 68.5
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.9e-168 595.5 486 68.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.9e-167 593.2 381 83.7
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.5e-167 592.8 505 64.6
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 7.3e-167 591.3 502 65.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.2e-166 588.2 485 67.2
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.0e-165 587.4 451 73.2
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.1e-165 585.9 485 67.2
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 8.9e-165 584.3 483 66.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.6e-164 582.8 483 66.7
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.7e-161 572.8 481 65.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 3.0e-160 569.3 450 72.7
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 6.8e-157 558.1 536 64.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-156 557.0 505 65.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-150 537.0 355 80.3
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.8e-147 525.8 484 63.8
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.8e-142 509.6 484 62.0
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 8.4e-139 498.0 416 69.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.1e-138 497.7 483 58.0
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 8.7e-136 488.0 478 59.0
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.6e-135 485.3 394 72.3
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.8e-133 480.3 441 65.1
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-126 457.2 478 57.3
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.8e-125 453.8 370 64.1
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.9e-123 446.4 415 61.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.9e-122 443.7 383 71.0
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-108 397.9 486 54.5
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 7.7e-100 368.6 207 89.9
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.0e-99 368.2 376 60.4
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.0e-99 368.2 376 60.4
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.3e-94 351.3 423 53.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 2.9e-91 340.1 374 52.9
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.1e-90 338.2 253 75.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.2e-89 334.7 324 54.9
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 8.8e-88 328.6 360 54.2
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.3e-79 300.1 220 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 9.7e-79 298.5 397 45.3
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.6e-76 291.2 221 71.0
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.2e-64 249.6 202 69.8
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.2e-63 248.4 276 55.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.6e-60 238.0 365 42.7
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 4.3e-58 229.9 411 38.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.6e-52 209.9 412 36.9
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-47 194.1 164 65.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.7e-38 163.7 97 83.5
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 1.1e-37 162.2 134 71.6
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.2e-36 158.7 297 42.4
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.7e-36 157.5 107 69.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 7.8e-36 156.0 92 85.9
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 7.6e-31 139.4 90 80.0
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.6e-20 105.1 185 39.5
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.7e-20 104.4 122 50.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.5e-18 97.8 164 44.5
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.9e-14 84.3 71 70.4
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.6e-12 77.0 60 61.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.6e-12 77.0 60 61.7
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.0e-12 76.6 84 52.4
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.3e-10 70.5 60 56.7
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 8.1e-09 66.2 68 57.4
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.0e-08 62.8 190 32.1
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 3.4e-07 60.8 50 74.0
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 7.6e-07 59.7 93 35.5
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 6.4e-06 56.6 34 67.6


User provided reference genes

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