Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.8e-194 681.8 349 100.0
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 1.2e-123 447.2 354 66.1
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 1.3e-122 443.7 352 67.6
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 4.4e-115 418.7 352 63.4
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 5.6e-110 401.7 352 61.6
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.2e-109 400.6 353 60.9
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 1.3e-106 390.6 357 59.1
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 2.4e-105 386.3 412 53.6
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.7e-103 380.2 347 58.2
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 8.6e-103 377.9 355 57.7
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 7.3e-102 374.8 354 59.0
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 2.8e-101 372.9 351 58.4
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 4.0e-100 369.0 352 57.1
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 8.9e-100 367.9 344 56.7
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 1.7e-98 363.6 356 55.9
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.2e-98 363.2 355 54.9
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 1.1e-97 360.9 354 54.8
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 1.9e-97 360.1 356 55.6
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 2.4e-97 359.8 348 56.3
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 3.2e-97 359.4 356 55.6
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 5.4e-97 358.6 361 54.0
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 2.1e-96 356.7 356 54.8
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 2.1e-96 356.7 356 54.8
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 6.0e-96 355.1 354 55.1
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 1.0e-95 354.4 357 54.9
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 3.0e-95 352.8 352 53.1
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 3.0e-95 352.8 350 53.4
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 1.5e-94 350.5 352 54.5
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 1.5e-94 350.5 357 55.2
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 4.3e-94 349.0 359 52.6
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 1.2e-93 347.4 359 52.6
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 4.7e-93 345.5 353 52.7
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 6.2e-93 345.1 355 54.1
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 8.1e-93 344.7 353 52.7
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 1.1e-92 344.4 364 51.9
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 1.4e-92 344.0 367 52.3
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 1.8e-92 343.6 321 56.7
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.1e-92 342.8 353 52.7
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 4.0e-92 342.4 353 52.7
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 5.2e-92 342.0 364 51.6
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.5e-91 340.5 353 53.0
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.5e-91 340.5 353 53.0
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 9.9e-91 337.8 161 99.4
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 1.3e-90 337.4 368 51.9
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.7e-90 337.0 351 54.7
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 2.9e-90 336.3 350 52.3
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 2.9e-90 336.3 341 53.4
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 6.4e-90 335.1 338 55.0
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 6.4e-90 335.1 366 48.6
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 3.2e-89 332.8 365 49.9
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 2.1e-88 330.1 358 52.2
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 2.7e-88 329.7 373 52.3
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 4.6e-88 328.9 362 52.5
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 6.0e-88 328.6 356 53.7
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 1.3e-87 327.4 284 58.5
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 5.1e-87 325.5 351 52.4
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 8.6e-87 324.7 338 52.1
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 4.3e-86 322.4 360 48.6
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 5.6e-86 322.0 284 59.2
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 7.3e-86 321.6 284 58.8
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 1.2e-85 320.9 355 53.0
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 1.4e-84 317.4 285 55.4
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 4.0e-84 315.8 284 57.0
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 2.2e-82 310.1 364 49.5
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 2.9e-82 309.7 376 46.8
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 8.4e-82 308.1 244 69.7
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 1.1e-81 307.8 363 50.1
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 1.1e-81 307.8 367 46.9
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 1.4e-81 307.4 435 44.8
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 6.0e-80 302.0 248 60.9
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 3.9e-79 299.3 367 48.5
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 5.1e-79 298.9 345 49.6
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 7.3e-78 295.0 300 55.0
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 1.3e-77 294.3 328 51.2
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 4.2e-73 279.3 283 53.7
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 5.4e-73 278.9 285 52.6
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 7.1e-73 278.5 353 44.2
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.2e-72 277.7 305 52.5
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 2.1e-72 276.9 280 52.9
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 1.0e-71 274.6 361 44.6
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 1.8e-71 273.9 320 49.7
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 8.7e-71 271.6 353 44.2
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 1.3e-69 267.7 303 50.2
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 3.7e-69 266.2 419 41.1
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 4.8e-69 265.8 298 49.7
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 6.2e-69 265.4 254 58.3
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 6.2e-69 265.4 201 63.2
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 1.5e-67 260.8 370 45.7
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 3.4e-67 259.6 258 60.1
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 5.8e-67 258.8 259 56.4
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 2.4e-60 236.9 564 33.5
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 9.0e-60 235.0 373 43.7
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 1.1e-57 228.0 263 50.2
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 1.5e-51 207.6 254 46.5
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 6.5e-50 202.2 317 38.8
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 1.9e-46 190.7 261 40.2
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.2e-37 160.6 217 43.3
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 1.8e-36 157.5 179 47.5
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 5.0e-34 149.4 156 44.9
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 3.9e-31 139.8 103 63.1
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 7.0e-28 129.0 349 27.2
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 7.2e-25 119.0 227 35.7
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 4.1e-20 103.2 103 50.5
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 5.0e-18 96.3 46 100.0
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 1.5e-17 94.7 84 54.8
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 3.2e-17 93.6 84 56.0
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 4.2e-17 93.2 163 31.3
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 5.7e-14 82.8 120 42.5
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.3e-13 81.6 374 27.5
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 2.0e-11 74.3 233 24.5
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 1.1e-09 68.6 45 71.1
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 5.5e-09 66.2 53 54.7
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 5.5e-09 66.2 64 53.1
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 7.2e-09 65.9 135 35.6
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 1.6e-08 64.7 61 52.5
HPP92_022101 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.8e-08 63.9 46 60.9
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 1.4e-07 61.6 37 67.6
Oeu061594.1 Olea europaea HOM05D003486 ORTHO05D004600 2.0e-06 57.8 109 33.9
SGA_v2.0_scaffold17G08091 Striga asiatica HOM05D003486 ORTHO05D004600 4.4e-06 56.6 109 33.9


User provided reference genes

Program Settings