Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.0e-53 212.2 114 100.0
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.3e-31 139.8 112 71.4
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 5.4e-30 134.4 112 69.6
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.1e-29 132.5 112 68.8
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 2.7e-29 132.1 112 69.6
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 3.0e-28 128.6 112 66.1
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.9e-28 128.3 112 66.1
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 5.1e-28 127.9 109 68.8
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 6.6e-28 127.5 107 68.2
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 6.6e-28 127.5 112 64.3
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 8.6e-28 127.1 107 69.2
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 8.6e-28 127.1 107 69.2
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.1e-27 126.7 113 62.8
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.5e-27 125.6 112 64.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.5e-27 125.6 112 64.3
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 2.5e-27 125.6 111 68.5
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 4.3e-27 124.8 107 68.2
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 5.6e-27 124.4 107 68.2
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.6e-26 122.9 107 66.4
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.8e-26 122.1 112 65.2
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.8e-26 122.1 112 61.6
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 2.8e-26 122.1 113 61.1
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 2.8e-26 122.1 112 64.3
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 6.2e-26 120.9 113 61.1
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 8.1e-26 120.6 112 62.5
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 8.1e-26 120.6 112 63.4
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.1e-25 120.2 113 61.1
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.4e-25 119.8 109 64.2
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.4e-25 119.8 112 62.5
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.4e-25 119.8 112 60.7
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.4e-25 119.0 112 59.8
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 2.4e-25 119.0 109 59.6
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 3.1e-25 118.6 113 60.2
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 4.0e-25 118.2 107 64.5
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 4.0e-25 118.2 107 64.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 4.0e-25 118.2 111 62.2
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 4.0e-25 118.2 112 59.8
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 5.2e-25 117.9 107 63.6
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 5.2e-25 117.9 107 63.6
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 6.9e-25 117.5 112 60.7
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 6.9e-25 117.5 96 68.8
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 8.9e-25 117.1 107 61.7
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 8.9e-25 117.1 107 61.7
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 8.9e-25 117.1 112 59.8
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.2e-24 116.7 107 63.6
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.5e-24 116.3 107 62.6
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.5e-24 116.3 112 60.7
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.0e-24 115.9 96 65.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 2.6e-24 115.5 107 61.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.6e-24 115.5 96 65.6
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.6e-24 115.5 96 65.6
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 2.6e-24 115.5 104 62.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.4e-24 115.2 96 63.5
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 3.4e-24 115.2 112 58.9
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 3.4e-24 115.2 96 66.7
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 4.4e-24 114.8 115 55.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 5.8e-24 114.4 96 62.5
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 5.8e-24 114.4 112 57.1
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 7.6e-24 114.0 107 61.7
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 9.9e-24 113.6 112 60.7
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 9.9e-24 113.6 113 56.6
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 9.9e-24 113.6 104 61.5
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.3e-23 113.2 104 61.5
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-23 113.2 112 57.1
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.3e-23 113.2 100 64.0
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.7e-23 112.8 107 61.7
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.7e-23 112.8 107 62.6
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.2e-23 112.5 112 57.1
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.9e-23 112.1 107 61.7
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.9e-23 112.1 96 64.6
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.9e-23 112.1 96 63.5
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.9e-23 112.1 112 56.2
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-23 112.1 112 56.2
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.9e-23 112.1 104 59.6
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 4.9e-23 111.3 111 58.6
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 6.4e-23 110.9 97 64.9
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 6.4e-23 110.9 112 61.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 8.4e-23 110.5 97 68.0
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.1e-22 110.2 91 65.9
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-22 110.2 112 54.5
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.4e-22 109.8 102 60.8
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-22 109.4 112 54.5
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-22 109.4 112 55.4
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-22 109.4 112 55.4
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.9e-22 109.4 107 59.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 4.2e-22 108.2 96 61.5
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.2e-21 106.7 107 57.0
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 2.1e-21 105.9 111 54.1
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.3e-20 102.4 96 57.3
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 6.6e-20 100.9 102 55.9
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.1e-19 100.1 106 57.5
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 5.6e-19 97.8 105 57.1
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 6.2e-18 94.4 75 72.0
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 5.3e-17 91.3 77 66.2
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 4.5e-16 88.2 74 66.2
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 4.5e-16 88.2 108 51.9
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 5.8e-16 87.8 74 67.6
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 7.6e-16 87.4 107 50.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 9.9e-16 87.0 100 51.0
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 4.2e-14 81.6 95 44.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 7.1e-14 80.9 74 59.5
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.3e-14 80.5 74 63.5
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 3.9e-12 75.1 96 50.0
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.3e-11 72.0 61 67.2
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 8.1e-10 67.4 93 38.7
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.5e-08 63.2 76 48.7
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.7e-07 59.7 88 39.8
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.9e-06 56.2 32 87.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 7.1e-06 54.3 75 42.7


User provided reference genes

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