Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 0.0e+00 1718.7 839 100.0
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 0.0e+00 1252.7 870 72.3
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1194.5 838 70.2
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1181.8 841 68.7
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 0.0e+00 1150.6 811 69.1
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 0.0e+00 1125.9 823 67.3
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 0.0e+00 1111.7 841 65.6
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 0.0e+00 1108.6 769 70.4
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1097.0 815 67.0
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 0.0e+00 1088.9 833 64.7
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 0.0e+00 1085.1 839 64.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 0.0e+00 1081.2 814 65.6
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 0.0e+00 1075.8 849 63.6
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 5.7e-312 1074.3 825 64.4
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 5.7e-312 1073.5 831 64.4
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 2.9e-311 1071.6 837 63.7
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 5.7e-310 1067.4 835 63.7
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.0e-307 1058.9 796 65.3
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 2.0e-307 1058.9 798 64.5
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.9e-305 1052.4 826 62.5
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.5e-305 1052.0 846 62.8
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 4.2e-305 1051.2 828 63.3
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 7.9e-304 1047.0 833 62.5
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 3.9e-303 1044.6 832 61.9
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.1e-302 1043.1 811 64.1
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.5e-299 1032.7 839 61.5
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 2.0e-299 1032.3 823 61.7
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 2.6e-299 1031.9 836 61.6
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.7e-298 1029.2 822 62.5
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.1e-297 1026.5 825 62.8
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 5.2e-295 1017.7 817 61.8
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.7e-295 1017.3 840 61.9
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.3e-293 1013.1 835 60.7
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.1e-292 1010.0 828 60.9
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-292 1009.2 840 59.6
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 2.6e-291 1005.4 833 61.2
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.3e-290 1003.0 793 62.3
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 2.5e-289 998.8 847 59.9
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 6.1e-288 994.2 826 61.1
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 6.1e-288 994.2 826 60.9
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 8.8e-287 990.3 772 63.7
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.0e-286 989.2 825 60.5
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 4.4e-286 988.0 781 62.5
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 9.7e-286 986.9 825 60.5
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.7e-285 986.1 828 58.7
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 4.1e-284 981.5 770 63.9
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 2.0e-283 979.2 810 60.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 6.5e-282 974.2 800 59.9
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.5e-281 972.2 745 65.9
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.4e-281 970.3 842 58.9
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.1e-280 969.1 834 59.2
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.3e-279 965.7 790 59.4
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 8.8e-279 963.8 842 57.4
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 8.3e-277 957.2 817 59.2
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.4e-276 956.4 782 63.0
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.8e-276 956.1 885 56.0
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.4e-276 954.5 775 60.9
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 7.7e-275 950.7 785 59.5
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 7.7e-275 950.7 827 57.8
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.7e-274 949.5 803 58.0
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.5e-273 946.4 758 61.6
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.5e-273 944.5 857 57.1
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 5.2e-271 937.9 831 56.9
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.8e-271 937.6 825 57.9
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 8.8e-271 937.2 774 58.1
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 2.8e-269 932.2 844 55.7
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 3.7e-269 931.8 789 58.6
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.8e-268 929.5 654 69.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 2.4e-268 929.1 791 57.8
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.0e-267 926.0 824 55.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 7.8e-267 924.1 835 55.8
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 3.8e-266 921.8 827 55.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 3.8e-266 921.8 791 57.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 5.6e-265 917.9 840 55.2
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 8.0e-264 914.1 813 55.8
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.0e-264 914.1 842 56.7
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.0e-263 913.7 835 55.9
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.4e-263 913.3 821 55.4
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 4.0e-263 911.8 836 54.8
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 3.4e-262 908.7 790 56.2
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 6.4e-261 904.4 767 60.6
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.1e-260 903.7 782 56.6
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.1e-260 903.7 782 56.5
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.1e-260 903.7 832 56.4
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.8e-260 902.9 825 55.4
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 5.4e-260 901.4 782 57.3
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-259 900.2 682 65.2
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 8.6e-258 894.0 782 56.6
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.9e-257 892.9 865 54.6
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 7.3e-257 891.0 818 54.2
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.6e-256 889.8 782 56.3
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 3.6e-256 888.6 815 54.6
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 6.2e-256 887.9 827 54.4
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 6.2e-256 887.9 827 54.4
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 6.2e-256 887.9 722 62.2
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 4.0e-255 885.2 827 54.2
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 4.4e-254 881.7 843 53.9
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 4.4e-254 881.7 841 53.5
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.2e-251 873.6 820 54.1
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 6.0e-251 871.3 738 58.5
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 8.1e-248 860.9 814 53.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.0e-247 858.6 686 63.0
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.5e-246 856.7 840 51.8
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.6e-243 846.7 807 53.0
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.2e-240 837.0 843 52.2
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.8e-237 825.5 845 52.9
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.5e-230 803.5 724 55.0
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 4.2e-228 795.4 853 49.7
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.2e-227 793.9 729 54.9
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 2.1e-227 793.1 872 49.7
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.1e-224 783.1 670 56.3
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.1e-220 770.8 823 46.5
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.0e-218 764.2 818 47.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 2.4e-212 743.0 942 44.1
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 4.3e-209 732.3 782 47.7
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 9.6e-209 731.1 683 53.9
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.5e-201 707.2 819 45.7
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.8e-200 702.2 614 57.8
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.0e-194 682.9 518 62.5
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 2.6e-190 669.8 681 49.9
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.7e-187 659.1 710 48.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.4e-183 647.5 759 44.5
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.1e-175 619.8 694 49.3
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 4.0e-162 576.2 387 71.3
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.0e-162 576.2 723 44.8
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.7e-160 569.7 479 57.8
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 9.2e-151 538.5 527 51.4
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.0e-134 482.6 345 69.9
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 3.6e-131 473.4 343 67.3
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.4e-129 466.8 713 37.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.9e-128 463.0 431 55.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 4.9e-112 409.8 622 38.9
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 4.2e-111 406.8 319 59.2
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.9e-100 371.3 791 30.6
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 5.3e-98 363.2 889 28.8
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 6.9e-98 362.8 405 47.2
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.1e-90 339.0 352 46.9
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.3e-85 322.0 375 44.3
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.3e-84 317.4 455 38.9
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 3.2e-79 300.8 308 48.7
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.9e-71 275.0 291 50.2
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.1e-68 265.8 392 35.2
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.9e-61 240.7 177 68.4
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.1e-58 230.7 200 58.0
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 7.7e-57 226.5 182 61.0
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 5.2e-29 134.0 139 49.6
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 3.7e-27 127.9 116 44.8
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.6e-22 111.3 111 50.5
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.2e-19 102.1 87 64.4
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.2e-17 96.3 146 33.6
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 2.5e-15 88.6 110 46.4
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 4.7e-14 84.3 83 44.6
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 2.9e-11 75.1 80 50.0
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.1e-09 68.9 36 80.6
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 7.8e-09 67.0 71 45.1
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 1.7e-08 65.9 66 51.5
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.1e-08 64.3 41 61.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.1e-07 63.2 197 27.9
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 2.1e-06 58.9 131 26.7


User provided reference genes

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