Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.6e-183 645.2 436 100.0
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 8.6e-76 288.5 452 45.6
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 6.4e-71 272.3 419 48.7
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.2e-66 258.1 423 43.0
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 3.6e-66 256.5 423 42.3
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 3.4e-64 250.0 458 42.1
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.9e-63 246.9 429 44.1
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 6.4e-63 245.7 426 43.2
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.6e-61 241.1 416 43.3
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.1e-61 240.7 428 44.2
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.3e-60 237.3 481 40.3
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 5.1e-60 236.1 471 42.0
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 2.8e-58 230.3 434 41.0
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 4.0e-57 226.5 425 38.8
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.8e-57 225.7 150 97.3
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 6.0e-53 212.6 443 39.3
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.0e-52 211.8 446 40.4
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 6.6e-52 209.1 449 39.2
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 4.3e-51 206.5 457 37.9
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.2e-50 204.9 467 37.9
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 2.1e-50 204.1 464 36.2
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 2.8e-50 203.8 435 38.4
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 1.1e-49 201.8 446 37.2
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 2.4e-49 200.7 481 38.0
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 3.1e-49 200.3 432 39.8
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.8e-49 199.1 458 35.2
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 2.6e-48 197.2 432 39.6
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.3e-47 194.9 469 38.2
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.7e-47 194.5 447 38.0
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 1.7e-47 194.5 454 34.1
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.2e-47 194.1 420 37.6
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 2.9e-47 193.7 427 40.5
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 4.9e-47 193.0 443 38.8
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 8.4e-47 192.2 428 39.3
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.4e-46 191.4 432 37.7
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.9e-46 191.0 453 35.1
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.9e-46 191.0 494 34.2
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 1.9e-46 191.0 467 39.2
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.9e-46 191.0 481 35.3
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 3.2e-46 190.3 441 38.8
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 4.2e-46 189.9 191 58.6
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 4.2e-46 189.9 447 37.8
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 5.4e-46 189.5 494 34.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 1.2e-45 188.3 484 36.2
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.2e-45 188.3 200 57.5
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 1.2e-45 188.3 456 39.5
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 2.1e-45 187.6 471 36.9
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.1e-45 187.6 483 35.2
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 3.5e-45 186.8 499 35.9
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 7.8e-45 185.7 464 37.1
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 6.6e-44 182.6 426 38.7
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 6.6e-44 182.6 329 41.0
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 8.7e-44 182.2 437 35.0
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.1e-43 181.8 451 37.0
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 2.5e-43 180.6 437 36.6
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 2.5e-43 180.6 419 35.6
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 7.3e-43 179.1 141 74.5
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 8.1e-42 175.6 438 37.0
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.1e-41 175.3 441 34.5
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-41 174.9 461 41.2
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 6.9e-41 172.6 440 35.7
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 6.9e-41 172.6 435 34.7
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 4.4e-40 169.9 441 36.5
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 4.4e-40 169.9 478 36.6
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 5.8e-40 169.5 437 35.9
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 7.6e-40 169.1 464 36.4
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 3.8e-39 166.8 181 56.9
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 4.9e-39 166.4 183 55.7
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.9e-38 164.5 472 32.8
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 5.4e-38 162.9 469 35.0
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 7.1e-38 162.5 468 35.5
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 2.1e-37 161.0 412 35.2
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 2.1e-37 161.0 441 35.4
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.0e-36 158.7 448 35.0
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.7e-36 157.9 461 34.3
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 6.6e-36 156.0 434 35.9
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 8.7e-36 155.6 427 33.5
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 8.7e-36 155.6 440 36.6
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 3.3e-35 153.7 472 32.6
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 4.3e-35 153.3 416 33.4
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 9.6e-35 152.1 471 33.8
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 6.2e-34 149.4 397 32.2
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 8.1e-34 149.1 397 36.0
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.1e-33 148.7 442 33.5
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.1e-33 148.7 467 34.9
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.8e-33 147.9 433 34.2
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 9.0e-33 145.6 454 31.9
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 2.0e-32 144.4 440 31.4
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 2.0e-32 144.4 435 34.5
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 3.4e-32 143.7 483 34.6
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 4.5e-32 143.3 380 34.2
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 4.5e-32 143.3 395 32.9
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 7.6e-32 142.5 400 31.2
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 9.9e-32 142.1 440 32.3
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.7e-31 141.4 461 31.5
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 4.9e-31 139.8 192 46.9
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 6.4e-31 139.4 485 29.5
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 5.5e-30 136.3 169 50.3
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 5.5e-30 136.3 169 50.3
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.8e-28 131.3 188 46.3
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.8e-28 131.3 188 46.3
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 3.0e-28 130.6 142 59.9
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 3.3e-27 127.1 146 50.0
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.6e-26 124.8 140 57.9
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 4.8e-26 123.2 142 57.0
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.4e-24 117.1 201 43.8
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.4e-24 117.1 201 43.8
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.4e-24 117.1 201 44.3
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 4.2e-22 110.2 201 42.3
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.2e-22 110.2 201 42.3
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 5.5e-22 109.8 441 30.4
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 3.9e-20 103.6 82 68.3
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 3.9e-20 103.6 364 32.7
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.8e-18 97.4 465 29.7
Dinv21951 Davidia involucrata HOM05D004921 ORTHO05D006008 2.5e-11 74.3 109 44.0
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 7.4e-11 72.8 47 78.7
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 6.9e-09 66.2 114 38.6
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 2.2e-07 61.2 53 58.5
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.9e-06 58.2 46 58.7
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.5e-06 57.8 128 30.5


User provided reference genes

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