Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0068F.1_g037260 Hydrangea macrophylla HOM05D000857 ORTHO05D228182 5.4e-92 340.9 162 100.0
Hma1.2p1_0579F.1_g182610 Hydrangea macrophylla HOM05D000857 ORTHO05D001382 3.4e-17 92.4 76 60.5
GSVIVG01001467001 Vitis vinifera HOM05D000857 ORTHO05D001382 1.7e-16 90.1 72 62.5
Glyma.09G225600 Glycine max HOM05D000857 ORTHO05D001382 3.7e-16 89.0 69 65.2
Cpa.g.sc197.24 Carica papaya HOM05D000857 ORTHO05D001382 1.4e-15 87.0 76 56.6
Lj7A575G46 Lonicera japonica HOM05D000857 ORTHO05D001382 2.4e-15 86.3 71 64.8
VMungo1127G2179 Vigna mungo HOM05D000857 ORTHO05D001382 3.1e-15 85.9 67 61.2
arahy.Tifrunner.gnm1.ann1.X5Q5RE Arachis hypogaea HOM05D000857 ORTHO05D001382 5.4e-15 85.1 77 59.7
DCAR_022365 Daucus carota HOM05D000857 ORTHO05D001382 5.4e-15 85.1 64 62.5
Thecc.10G002500 Theobroma cacao HOM05D000857 ORTHO05D001382 5.4e-15 85.1 75 56.0
PGR031G0265 Punica granatum HOM05D000857 ORTHO05D001382 9.1e-15 84.3 112 43.8
Phvul.011G013800 Phaseolus vulgaris HOM05D000857 ORTHO05D001382 1.6e-14 83.6 67 59.7
arahy.Tifrunner.gnm1.ann1.W4JVCT Arachis hypogaea HOM05D000857 ORTHO05D001382 2.0e-14 83.2 77 58.4
Dinv13978 Davidia involucrata HOM05D000857 ORTHO05D001382 2.0e-14 83.2 66 66.7
Duzib128G0003 Durio zibethinus HOM05D000857 ORTHO05D001382 2.7e-14 82.8 75 54.7
Dinv07417 Davidia involucrata HOM05D000857 ORTHO05D001382 3.5e-14 82.4 82 54.9
Glyma.09G225700 Glycine max HOM05D000857 ORTHO05D001382 3.5e-14 82.4 70 60.0
Glyma.12G010800 Glycine max HOM05D000857 ORTHO05D001382 3.5e-14 82.4 65 64.6
Lj3g0011829 Lotus japonicus HOM05D000857 ORTHO05D001382 4.5e-14 82.0 78 53.8
Lj3g0023593 Lotus japonicus HOM05D000857 ORTHO05D001382 4.5e-14 82.0 78 53.8
Lalb_Chr19g0140181 Lupinus albus HOM05D000857 ORTHO05D001382 4.5e-14 82.0 67 59.7
Duzib114G0023 Durio zibethinus HOM05D000857 ORTHO05D001382 5.9e-14 81.6 75 53.3
Manes.11G101600 Manihot esculenta HOM05D000857 ORTHO05D001382 5.9e-14 81.6 83 50.6
CiPaw.13G009000 Carya illinoinensis HOM05D000857 ORTHO05D001382 7.7e-14 81.3 67 59.7
Glyma.12G010900 Glycine max HOM05D000857 ORTHO05D001382 7.7e-14 81.3 65 64.6
Lj3g0015211 Lotus japonicus HOM05D000857 ORTHO05D001382 7.7e-14 81.3 64 65.6
Peaxi162Scf01115g00013 Petunia axillaris HOM05D000857 ORTHO05D001382 1.3e-13 80.5 65 60.0
QL04p012178 Quercus lobata HOM05D000857 ORTHO05D001382 1.3e-13 80.5 67 59.7
Ah.12g065230 Amaranthus hybridus HOM05D000857 ORTHO05D001382 1.7e-13 80.1 86 48.8
Oeu027359.3 Olea europaea HOM05D000857 ORTHO05D001382 1.7e-13 80.1 75 58.7
EL10Ac2g02890 Beta vulgaris HOM05D000857 ORTHO05D001382 2.2e-13 79.7 89 47.2
RcHm_v2.0_Chr1g0318971 Rosa chinensis HOM05D000857 ORTHO05D001382 2.9e-13 79.3 87 50.6
Duzib106G0205 Durio zibethinus HOM05D000857 ORTHO05D001382 3.8e-13 79.0 75 50.7
Cfa010835 Carpinus fangiana HOM05D000857 ORTHO05D001382 5.0e-13 78.6 67 58.2
Haze_03099 Corylus avellana HOM05D000857 ORTHO05D001382 5.0e-13 78.6 67 58.2
Psat5g213040 Pisum sativum HOM05D000857 ORTHO05D001382 6.5e-13 78.2 73 57.5
TPR.G2769 Trifolium pratense HOM05D000857 ORTHO05D001382 6.5e-13 78.2 76 55.3
Medtr3g436060 Medicago truncatula HOM05D000857 ORTHO05D001382 1.1e-12 77.4 76 59.2
TPR.G20256 Trifolium pratense HOM05D000857 ORTHO05D001382 1.5e-12 77.0 67 58.2
CAN.G410.10 Capsicum annuum HOM05D000857 ORTHO05D001382 1.9e-12 76.6 66 59.1
DCAR_031817 Daucus carota HOM05D000857 ORTHO05D001382 1.9e-12 76.6 68 55.9
Gohir.A06G158300 Gossypium hirsutum HOM05D000857 ORTHO05D001382 1.9e-12 76.6 75 53.3
Psat7g201880 Pisum sativum HOM05D000857 ORTHO05D001382 2.5e-12 76.3 64 56.2
Gorai.010G191400 Gossypium raimondii HOM05D000857 ORTHO05D001382 3.2e-12 75.9 75 53.3
Hund13300 Selenicereus undatus HOM05D000857 ORTHO05D001382 3.2e-12 75.9 64 56.2
VMungo1127G0001 Vigna mungo HOM05D000857 ORTHO05D001382 3.2e-12 75.9 68 58.8
CiPaw.14G004700 Carya illinoinensis HOM05D000857 ORTHO05D001382 4.2e-12 75.5 67 52.2
Gohir.D06G164200 Gossypium hirsutum HOM05D000857 ORTHO05D001382 4.2e-12 75.5 75 53.3
Lj9A643T36 Lonicera japonica HOM05D000857 ORTHO05D001382 4.2e-12 75.5 64 60.9
Potri.001G020300 Populus trichocarpa HOM05D000857 ORTHO05D001382 4.2e-12 75.5 85 48.2
MSTRG.5052 Avicennia marina HOM05D000857 ORTHO05D001382 7.2e-12 74.7 67 58.2
Sc10g0004130 Simmondsia chinensis HOM05D000857 ORTHO05D001382 7.2e-12 74.7 67 58.2
Sopen01g034970 Solanum pennellii HOM05D000857 ORTHO05D001382 7.2e-12 74.7 64 60.9
PGSC0003DMG400006828 Solanum tuberosum HOM05D000857 ORTHO05D001382 7.2e-12 74.7 64 60.9
AUR62018338 Chenopodium quinoa HOM05D000857 ORTHO05D001382 1.6e-11 73.6 82 46.3
AUR62030545 Chenopodium quinoa HOM05D000857 ORTHO05D001382 1.6e-11 73.6 82 46.3
FvH4_7g01970 Fragaria vesca HOM05D000857 ORTHO05D001382 1.6e-11 73.6 87 47.1
FAN06G2197 Fragaria x ananassa HOM05D000857 ORTHO05D001382 1.6e-11 73.6 87 47.1
SalBow6G4312 Salvia bowleyana HOM05D000857 ORTHO05D001382 2.1e-11 73.2 67 55.2
SalBow6G5566 Salvia bowleyana HOM05D000857 ORTHO05D001382 2.1e-11 73.2 67 55.2
Lalb_Chr01g0013791 Lupinus albus HOM05D000857 ORTHO05D001382 2.7e-11 72.8 66 57.6
Phvul.011G013700 Phaseolus vulgaris HOM05D000857 ORTHO05D001382 2.7e-11 72.8 65 58.5
Eucgr.G03273 Eucalyptus grandis HOM05D000857 ORTHO05D001382 3.6e-11 72.4 77 48.1
Actinidia06284 Actinidia chinensis HOM05D000857 ORTHO05D001382 4.7e-11 72.0 80 55.0
FAN03G2958 Fragaria x ananassa HOM05D000857 ORTHO05D001382 4.7e-11 72.0 87 46.0
FAN10G0667 Fragaria x ananassa HOM05D000857 ORTHO05D001382 4.7e-11 72.0 87 46.0
FAN10G3857 Fragaria x ananassa HOM05D000857 ORTHO05D001382 4.7e-11 72.0 87 46.0
Rhsim07G0061000 Rhododendron simsii HOM05D000857 ORTHO05D001382 4.7e-11 72.0 82 48.8
COL.COLO4_19331 Corchorus olitorius HOM05D000857 ORTHO05D001382 6.1e-11 71.6 116 37.1
MD02G1298200 Malus domestica HOM05D000857 ORTHO05D001382 6.1e-11 71.6 88 47.7
MD07G1025800 Malus domestica HOM05D000857 ORTHO05D001382 6.1e-11 71.6 86 50.0
Nitab4.5_0002187g0030 Nicotiana tabacum HOM05D000857 ORTHO05D001382 6.1e-11 71.6 97 44.3
FAN01G0815 Fragaria x ananassa HOM05D000857 ORTHO05D001382 8.0e-11 71.2 87 46.0
Prupe.2G026000 Prunus persica HOM05D000857 ORTHO05D001382 8.0e-11 71.2 85 51.8
TAR633G1867 Trochodendron aralioides HOM05D000857 ORTHO05D001382 8.0e-11 71.2 90 46.7
ClCG02G013970 Citrullus lanatus HOM05D000857 ORTHO05D001382 1.0e-10 70.9 65 58.5
Oeu049462.3 Olea europaea HOM05D000857 ORTHO05D001382 1.0e-10 70.9 63 60.3
Manes.06G162000 Manihot esculenta HOM05D000857 ORTHO05D001382 1.4e-10 70.5 90 41.1
Sabra03G0150900 Salix brachista HOM05D000857 ORTHO05D001382 1.4e-10 70.5 70 54.3
Ca_14188_v3 Cicer arietinum L. HOM05D000857 ORTHO05D001382 1.8e-10 70.1 67 53.7
Nitab4.5_0000316g0380 Nicotiana tabacum HOM05D000857 ORTHO05D001382 1.8e-10 70.1 65 60.0
Ca_26763_v3 Cicer arietinum L. HOM05D000857 ORTHO05D001382 2.3e-10 69.7 65 52.3
MELO3C011738.2 Cucumis melo HOM05D000857 ORTHO05D001382 2.3e-10 69.7 64 51.6
Nn2g15925 Nelumbo nucifera HOM05D000857 ORTHO05D001382 3.0e-10 69.3 84 45.2
TAR636G0714 Trochodendron aralioides HOM05D000857 ORTHO05D001382 3.0e-10 69.3 61 55.7
COL.COLO4_36466 Corchorus olitorius HOM05D000857 ORTHO05D001382 4.0e-10 68.9 64 57.8
Lalb_Chr03g0024161 Lupinus albus HOM05D000857 ORTHO05D001382 4.0e-10 68.9 75 50.7
PSO339G4199 Papaver somniferum HOM05D000857 ORTHO05D001382 4.0e-10 68.9 57 56.1
PSO384G2840 Papaver somniferum HOM05D000857 ORTHO05D001382 4.0e-10 68.9 57 56.1
Potri.003G204300 Populus trichocarpa HOM05D000857 ORTHO05D001382 4.0e-10 68.9 84 44.0
THA.LOC104819109 Tarenaya hassleriana HOM05D000857 ORTHO05D001382 4.0e-10 68.9 62 54.8
Thecc.09G239500 Theobroma cacao HOM05D000857 ORTHO05D001382 5.2e-10 68.6 60 55.0
TWI60G1511 Tripterygium wilfordii HOM05D000857 ORTHO05D001382 5.2e-10 68.6 73 47.9
CsaV3_5G006190 Cucumis sativus L. HOM05D000857 ORTHO05D001382 6.8e-10 68.2 64 51.6
THA.LOC104826706 Tarenaya hassleriana HOM05D000857 ORTHO05D001382 6.8e-10 68.2 91 41.8
Cpa.g.sc84.25 Carica papaya HOM05D000857 ORTHO05D001382 8.8e-10 67.8 63 50.8
Gohir.D13G013500 Gossypium hirsutum HOM05D000857 ORTHO05D001382 8.8e-10 67.8 68 51.5
Sed0000318 Sechium edule HOM05D000857 ORTHO05D001382 8.8e-10 67.8 64 53.1
TWI32G0084 Tripterygium wilfordii HOM05D000857 ORTHO05D001382 8.8e-10 67.8 56 57.1
Gohir.D09G108800 Gossypium hirsutum HOM05D000857 ORTHO05D001382 1.2e-09 67.4 67 50.7
Gorai.006G126400 Gossypium raimondii HOM05D000857 ORTHO05D001382 1.2e-09 67.4 67 50.7
Gorai.013G014500 Gossypium raimondii HOM05D000857 ORTHO05D001382 1.2e-09 67.4 68 50.0
Ciclev10030728m.g Citrus clementina HOM05D000857 ORTHO05D001382 1.5e-09 67.0 66 48.5
Duzib170G0229 Durio zibethinus HOM05D000857 ORTHO05D001382 1.5e-09 67.0 59 57.6
Lalb_Chr01g0000551 Lupinus albus HOM05D000857 ORTHO05D001382 1.5e-09 67.0 67 55.2
TWI34G0759 Tripterygium wilfordii HOM05D000857 ORTHO05D001382 2.0e-09 66.6 56 55.4
CiPaw.13G154700 Carya illinoinensis HOM05D000857 ORTHO05D001382 2.6e-09 66.2 74 47.3
Manes.14G004600 Manihot esculenta HOM05D000857 ORTHO05D001382 3.4e-09 65.9 54 55.6
vmacro13710 Vaccinium macrocarpon HOM05D000857 ORTHO05D001382 3.4e-09 65.9 86 45.3
Duzib150G1577 Durio zibethinus HOM05D000857 ORTHO05D001382 4.4e-09 65.5 60 53.3
Gohir.A09G112100 Gossypium hirsutum HOM05D000857 ORTHO05D001382 5.7e-09 65.1 64 53.1
Potri.009G050700 Populus trichocarpa HOM05D000857 ORTHO05D001382 5.7e-09 65.1 62 46.8
SalBow6G0952 Salvia bowleyana HOM05D000857 ORTHO05D001382 5.7e-09 65.1 71 50.7
Haze_23176 Corylus avellana HOM05D000857 ORTHO05D001382 7.5e-09 64.7 71 49.3
Sabra01G0015000 Salix brachista HOM05D000857 ORTHO05D001382 7.5e-09 64.7 85 44.7
Sabra16G0156700 Salix brachista HOM05D000857 ORTHO05D001382 7.5e-09 64.7 62 46.8
Gohir.A13G012400 Gossypium hirsutum HOM05D000857 ORTHO05D001382 9.8e-09 64.3 68 50.0
CSS0004029 Camellia sinensis var. sinensis HOM05D000857 ORTHO05D001382 1.3e-08 63.9 68 52.9
CSS0035114 Camellia sinensis var. sinensis HOM05D000857 ORTHO05D001382 1.3e-08 63.9 68 52.9
DCAR_003231 Daucus carota HOM05D000129 ORTHO05D000144 1.3e-08 63.9 65 47.7
Sed0006738 Sechium edule HOM05D000857 ORTHO05D001382 1.7e-08 63.5 64 56.2
HanXRQChr01g0021001 Helianthus annuus HOM05D000857 ORTHO05D001382 2.8e-08 62.8 59 54.2
MD13G1017100 Malus domestica HOM05D000857 ORTHO05D001382 2.8e-08 62.8 74 51.4
QL01p003959 Quercus lobata HOM05D000857 ORTHO05D001382 2.8e-08 62.8 67 50.7
Atru.chr11.2556 Acer truncatum HOM05D000857 ORTHO05D001382 3.7e-08 62.4 76 47.4
SGA_v2.0_scaffold354G49748 Striga asiatica HOM05D000857 ORTHO05D001382 4.9e-08 62.0 70 51.4
Lsat_1_v5_gn_1_99660 Lactuca sativa HOM05D000857 ORTHO05D001382 6.3e-08 61.6 62 53.2
Potri.001G255532 Populus trichocarpa HOM05D000857 ORTHO05D001382 1.4e-07 60.5 59 45.8
Sc11g0006810 Simmondsia chinensis HOM05D000857 ORTHO05D001382 3.1e-07 59.3 68 42.6
Sabra09G0037100 Salix brachista HOM05D000857 ORTHO05D001382 4.1e-07 58.9 61 49.2
EL10Ac6g13793 Beta vulgaris HOM05D000857 ORTHO05D016690 5.4e-07 58.5 75 42.7
Atru.chr3.2643 Acer truncatum HOM05D000857 ORTHO05D001382 7.0e-07 58.2 70 47.1
Aqoxy2G00020 Aquilegia oxysepala HOM05D000857 ORTHO05D001382 7.0e-07 58.2 56 58.9
Cc01_g05070 Coffea canephora HOM05D000857 ORTHO05D001382 7.0e-07 58.2 71 49.3
Haze_23177 Corylus avellana HOM05D000857 ORTHO05D001382 1.6e-06 57.0 78 43.6
ECA248G1049 Erigeron canadensis HOM05D000857 ORTHO05D001382 1.6e-06 57.0 54 50.0
TPR.G38054 Trifolium pratense HOM05D000857 ORTHO05D001382 1.6e-06 57.0 63 47.6
Prupe.4G255100 Prunus persica HOM05D000857 ORTHO05D001382 2.7e-06 56.2 59 47.5
GSVIVG01031538001 Vitis vinifera HOM05D000857 ORTHO05D001382 2.7e-06 56.2 64 45.3
MD11G1189300 Malus domestica HOM05D000857 ORTHO05D001382 3.5e-06 55.8 55 43.6
Dinv22159 Davidia involucrata HOM05D000857 ORTHO05D001382 4.5e-06 55.5 66 47.0
FAN21G1822 Fragaria x ananassa HOM05D000857 ORTHO05D001382 5.9e-06 55.1 64 45.3
Medtr0005s0130 Medicago truncatula HOM05D000857 ORTHO05D001382 5.9e-06 55.1 51 56.9
Medtr4g043660 Medicago truncatula HOM05D000857 ORTHO05D001382 5.9e-06 55.1 51 56.9
Aqoxy1G00018 Aquilegia oxysepala HOM05D000857 ORTHO05D001382 7.7e-06 54.7 62 51.6
RcHm_v2.0_Chr5g0053281 Rosa chinensis HOM05D000857 ORTHO05D001382 7.7e-06 54.7 62 45.2


User provided reference genes

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