Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.1e-26 120.9 57 100.0
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 6.7e-21 103.2 57 84.2
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.7e-21 103.2 57 84.2
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 6.7e-21 103.2 57 86.0
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.7e-21 103.2 57 84.2
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 6.7e-21 103.2 57 84.2
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 8.7e-21 102.8 57 82.5
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 8.7e-21 102.8 57 82.5
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 8.7e-21 102.8 57 82.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.7e-21 102.8 57 82.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.5e-20 102.1 57 82.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.5e-20 102.1 57 82.5
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 82.5
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 80.7
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 82.5
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 82.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 82.5
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 82.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 82.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.9e-20 101.7 57 82.5
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.5e-20 101.3 57 80.7
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.5e-20 101.3 57 82.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.5e-20 101.3 57 80.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.5e-20 101.3 57 82.5
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.3e-20 100.9 57 80.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.3e-20 100.9 57 80.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.3e-20 100.9 57 80.7
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.3e-20 100.5 57 82.5
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 4.3e-20 100.5 57 80.7
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.3e-20 100.5 57 80.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 4.3e-20 100.5 57 80.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 80.7
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 80.7
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 78.9
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 78.9
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 80.7
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 80.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 80.7
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.7e-20 100.1 57 78.9
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 7.4e-20 99.8 57 78.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 7.4e-20 99.8 57 80.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 9.7e-20 99.4 57 78.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 9.7e-20 99.4 57 78.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 9.7e-20 99.4 57 80.7
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 9.7e-20 99.4 57 80.7
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 9.7e-20 99.4 57 80.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.7e-20 99.4 57 78.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 9.7e-20 99.4 56 82.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 78.9
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 78.9
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 78.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 78.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 77.2
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 78.9
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 78.9
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.3e-19 99.0 57 78.9
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.6e-19 98.6 57 77.2
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.6e-19 98.6 57 77.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.2e-19 98.2 57 78.9
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.2e-19 98.2 57 77.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.2e-19 98.2 57 78.9
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.2e-19 98.2 57 78.9
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.8e-19 97.8 57 78.9
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.8e-19 97.8 57 77.2
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.8e-19 97.8 57 77.2
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.8e-19 97.8 57 78.9
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.8e-19 97.8 57 78.9
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.8e-19 97.8 57 78.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.8e-19 97.8 57 77.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.7e-19 97.4 57 77.2
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.7e-19 97.4 57 75.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 4.8e-19 97.1 57 78.9
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 4.8e-19 97.1 57 77.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 4.8e-19 97.1 57 78.9
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.8e-19 97.1 57 78.9
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.8e-19 97.1 57 78.9
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 4.8e-19 97.1 57 78.9
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.8e-19 97.1 57 78.9
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 78.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 78.9
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 75.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 75.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 75.4
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 77.2
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 77.2
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.3e-19 96.7 57 77.2
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 8.2e-19 96.3 57 75.4
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 8.2e-19 96.3 56 78.6
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 8.2e-19 96.3 57 75.4
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 8.2e-19 96.3 57 73.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.2e-19 96.3 57 77.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-18 95.9 57 73.7
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.1e-18 95.9 57 75.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.1e-18 95.9 57 77.2
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.4e-18 95.5 57 75.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-18 95.5 57 71.9
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.8e-18 95.1 57 75.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-18 95.1 57 75.4
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.8e-18 95.1 57 77.2
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.8e-18 95.1 57 75.4
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.8e-18 95.1 57 73.7
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.8e-18 95.1 57 75.4
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 2.4e-18 94.7 57 75.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.1e-18 94.4 57 75.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.1e-18 94.4 57 73.7
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.1e-18 94.0 57 75.4
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 4.1e-18 94.0 57 75.4
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 4.1e-18 94.0 57 71.9
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.1e-18 94.0 57 77.2
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.1e-18 94.0 57 75.4
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.3e-18 93.6 57 75.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.3e-18 93.6 57 75.4
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 5.3e-18 93.6 57 71.9
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.9e-18 93.2 57 73.7
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 6.9e-18 93.2 57 73.7
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 6.9e-18 93.2 57 75.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 6.9e-18 93.2 57 73.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 6.9e-18 93.2 57 73.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.0e-18 92.8 57 73.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 9.0e-18 92.8 57 71.9
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-17 92.4 57 73.7
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.2e-17 92.4 57 73.7
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-17 92.4 57 75.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.5e-17 92.0 57 71.9
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.5e-17 92.0 57 71.9
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.0e-17 91.7 57 71.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.0e-17 91.7 57 73.7
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.5e-17 90.5 57 71.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 4.5e-17 90.5 57 73.7
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 5.9e-17 90.1 57 68.4
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.0e-16 89.4 57 70.2
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.0e-16 89.4 56 67.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.3e-16 89.0 57 68.4
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.3e-16 89.0 56 73.2
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.2e-16 88.2 57 71.9
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.4e-15 85.5 57 68.4
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 5.1e-13 77.0 55 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 8.8e-13 76.3 57 63.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.1e-12 75.9 56 62.5
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.3e-12 74.3 40 82.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.3e-12 73.9 57 57.9
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.5e-09 63.9 57 52.6
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 7.2e-07 56.6 59 54.2


User provided reference genes

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