Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0066F.1_g036610 Hydrangea macrophylla HOM05D006571 ORTHO05D007771 6.9e-140 501.5 446 100.0
CDE04G1022 Ceratophyllum demersum HOM05D006571 ORTHO05D007771 3.9e-74 283.1 252 66.7
CDE07G0561 Ceratophyllum demersum HOM05D006571 ORTHO05D007771 3.3e-73 280.0 248 66.5
MBI16_g37746_MAGBIO Magnolia biondii HOM05D006571 ORTHO05D007771 1.8e-71 274.2 247 65.2
Psat4g091960 Pisum sativum HOM05D006571 ORTHO05D007771 3.1e-71 273.5 251 65.7
Gohir.D03G015600 Gossypium hirsutum HOM05D006571 ORTHO05D007771 4.0e-71 273.1 240 65.4
Gorai.003G015800 Gossypium raimondii HOM05D006571 ORTHO05D007771 4.0e-71 273.1 240 65.4
arahy.Tifrunner.gnm1.ann1.J8IV3X Arachis hypogaea HOM05D006571 ORTHO05D007771 1.2e-70 271.6 248 64.1
arahy.Tifrunner.gnm1.ann1.P9WABM Arachis hypogaea HOM05D006571 ORTHO05D007771 1.2e-70 271.6 248 64.1
Aqoxy6G01074 Aquilegia oxysepala HOM05D006571 ORTHO05D007771 3.4e-70 270.0 247 63.6
Thecc.01G037900 Theobroma cacao HOM05D006571 ORTHO05D007771 3.4e-70 270.0 240 65.8
Gohir.A02G164500 Gossypium hirsutum HOM05D006571 ORTHO05D007771 5.8e-70 269.2 240 65.0
TAR376G1222 Trochodendron aralioides HOM05D006571 ORTHO05D007771 1.7e-69 267.7 246 63.8
GSVIVG01031937001 Vitis vinifera HOM05D006571 ORTHO05D007771 1.7e-69 267.7 160 79.4
Duzib187G0259 Durio zibethinus HOM05D006571 ORTHO05D007771 2.2e-69 267.3 248 64.5
COL.COLO4_22100 Corchorus olitorius HOM05D006571 ORTHO05D007771 2.9e-69 266.9 212 71.2
Duzib147G0515 Durio zibethinus HOM05D006571 ORTHO05D007771 2.9e-69 266.9 209 69.9
Gorai.007G204400 Gossypium raimondii HOM05D006571 ORTHO05D007771 4.9e-69 266.2 245 65.7
QL06p045652 Quercus lobata HOM05D006571 ORTHO05D007771 6.4e-69 265.8 239 68.2
Haze_15108 Corylus avellana HOM05D006571 ORTHO05D007771 8.4e-69 265.4 242 67.4
Lalb_Chr09g0322511 Lupinus albus HOM05D006571 ORTHO05D007771 1.1e-68 265.0 209 71.3
Lalb_Chr16g0377891 Lupinus albus HOM05D006571 ORTHO05D007771 1.4e-68 264.6 238 66.4
Nitab4.5_0001466g0040 Nicotiana tabacum HOM05D006571 ORTHO05D007771 1.9e-68 264.2 254 60.6
Gohir.D11G191700 Gossypium hirsutum HOM05D006571 ORTHO05D007771 2.4e-68 263.8 245 64.5
Sc03g0000790 Simmondsia chinensis HOM05D006571 ORTHO05D007771 2.4e-68 263.8 240 62.5
MD02G1150500 Malus domestica HOM05D006571 ORTHO05D007771 3.2e-68 263.5 248 62.9
TPR.G34976 Trifolium pratense HOM05D006571 ORTHO05D007771 7.1e-68 262.3 252 64.7
Cc07_g09340 Coffea canephora HOM05D006571 ORTHO05D007771 9.2e-68 261.9 243 65.0
PGSC0003DMG400017777 Solanum tuberosum HOM05D006571 ORTHO05D007771 9.2e-68 261.9 230 63.0
Gohir.A11G185200 Gossypium hirsutum HOM05D006571 ORTHO05D007771 1.2e-67 261.5 247 66.0
MD15G1265000 Malus domestica HOM05D006571 ORTHO05D007771 1.2e-67 261.5 209 69.9
Manes.02G092300 Manihot esculenta HOM05D006571 ORTHO05D007771 1.2e-67 261.5 209 67.0
CSS0027902 Camellia sinensis var. sinensis HOM05D006571 ORTHO05D007771 1.6e-67 261.2 160 75.6
Solyc03g034080.4 Solanum lycopersicum HOM05D006571 ORTHO05D007771 1.6e-67 261.2 230 61.7
THA.LOC104807447 Tarenaya hassleriana HOM05D006571 ORTHO05D007771 1.6e-67 261.2 252 59.5
Prupe.7G152600 Prunus persica HOM05D006571 ORTHO05D007771 2.1e-67 260.8 248 64.5
Ca_22257_v3 Cicer arietinum L. HOM05D006571 ORTHO05D007771 2.7e-67 260.4 249 63.5
CANSAT01G0415 Cannabis sativa HOM05D006571 ORTHO05D007771 3.5e-67 260.0 248 64.5
Duzib264G0679 Durio zibethinus HOM05D006571 ORTHO05D007771 3.5e-67 260.0 240 65.4
Hma1.2p1_0400F.1_g144570 Hydrangea macrophylla HOM05D006571 ORTHO05D007771 3.5e-67 260.0 244 63.5
Lj4g0016878 Lotus japonicus HOM05D006571 ORTHO05D007771 3.5e-67 260.0 253 61.7
Sopen03g006860 Solanum pennellii HOM05D006571 ORTHO05D007771 3.5e-67 260.0 230 61.7
FvH4_1g13531 Fragaria vesca HOM05D006571 ORTHO05D007771 4.6e-67 259.6 209 71.8
FAN23G2572 Fragaria x ananassa HOM05D006571 ORTHO05D007771 4.6e-67 259.6 209 72.2
FAN26G3136 Fragaria x ananassa HOM05D006571 ORTHO05D007771 4.6e-67 259.6 209 71.8
SalBow5G2751 Salvia bowleyana HOM05D006571 ORTHO05D007771 6.0e-67 259.2 253 60.5
GSVIVG01018984001 Vitis vinifera HOM05D006571 ORTHO05D007771 6.0e-67 259.2 254 62.6
Sabra07G0024000 Salix brachista HOM05D006571 ORTHO05D007771 1.0e-66 258.5 235 61.3
Glyma.02G057800 Glycine max HOM05D006571 ORTHO05D007771 1.3e-66 258.1 212 69.8
Glyma.16G140800 Glycine max HOM05D006571 ORTHO05D007771 1.3e-66 258.1 255 63.1
ECA246G1775 Erigeron canadensis HOM05D006571 ORTHO05D007771 1.7e-66 257.7 252 59.9
CiPaw.01G036100 Carya illinoinensis HOM05D006571 ORTHO05D007771 2.3e-66 257.3 239 64.9
RcHm_v2.0_Chr2g0101911 Rosa chinensis HOM05D006571 ORTHO05D007771 2.3e-66 257.3 248 63.3
CAN.G1028.5 Capsicum annuum HOM05D006571 ORTHO05D007771 5.1e-66 256.1 229 62.4
Lj2P450T8 Lonicera japonica HOM05D006571 ORTHO05D007771 5.1e-66 256.1 186 73.1
Atru.chr3.554 Acer truncatum HOM05D006571 ORTHO05D007771 6.6e-66 255.8 246 63.0
CiPaw.02G016100 Carya illinoinensis HOM05D006571 ORTHO05D007771 6.6e-66 255.8 239 64.0
Hund14147 Selenicereus undatus HOM05D006571 ORTHO05D007771 6.6e-66 255.8 244 64.8
VMungo0251G2973 Vigna mungo HOM05D006571 ORTHO05D007771 6.6e-66 255.8 250 61.6
HanXRQChr16g0530131 Helianthus annuus HOM05D006571 ORTHO05D007771 1.1e-65 255.0 254 61.0
Phvul.003G252700 Phaseolus vulgaris HOM05D006571 ORTHO05D007771 1.1e-65 255.0 250 61.6
Migut.L00283 Erythranthe guttata HOM05D006571 ORTHO05D007771 1.5e-65 254.6 188 72.3
Oeu023993.1 Olea europaea HOM05D006571 ORTHO05D007771 1.5e-65 254.6 250 62.0
Peaxi162Scf00751g00044 Petunia axillaris HOM05D006571 ORTHO05D007771 1.5e-65 254.6 241 59.8
TWI53G0501 Tripterygium wilfordii HOM05D006571 ORTHO05D007771 1.5e-65 254.6 242 61.2
AUR62003170 Chenopodium quinoa HOM05D006571 ORTHO05D007771 1.9e-65 254.2 160 75.0
TWI09G0338 Tripterygium wilfordii HOM05D006571 ORTHO05D007771 2.5e-65 253.8 244 64.8
SGA_v2.0_scaffold402G50988 Striga asiatica HOM05D006571 ORTHO05D007771 3.3e-65 253.4 196 68.4
Lj9A368T57 Lonicera japonica HOM05D006571 ORTHO05D007771 4.3e-65 253.1 254 59.1
ATR0733G171 Amborella trichopoda HOM05D006571 ORTHO05D007771 5.6e-65 252.7 197 71.1
AL5G30850 Arabidopsis lyrata HOM05D006571 ORTHO05D007771 5.6e-65 252.7 263 60.5
EL10Ac6g14930 Beta vulgaris HOM05D006571 ORTHO05D007771 5.6e-65 252.7 160 75.0
Actinidia12116 Actinidia chinensis HOM05D006571 ORTHO05D007771 7.3e-65 252.3 209 70.3
Actinidia36549 Actinidia chinensis HOM05D006571 ORTHO05D007771 9.6e-65 251.9 209 68.4
Manes.01G133900 Manihot esculenta HOM05D006571 ORTHO05D007771 9.6e-65 251.9 159 74.8
Medtr8g077860 Medicago truncatula HOM05D006571 ORTHO05D007771 9.6e-65 251.9 254 63.4
Aa31LG4G18850 Aethionema arabicum HOM05D006571 ORTHO05D007771 1.2e-64 251.5 256 62.9
Carub.0005s1702 Capsella rubella HOM05D006571 ORTHO05D007771 2.1e-64 250.8 263 58.9
Potri.007G027500 Populus trichocarpa HOM05D006571 ORTHO05D007771 2.1e-64 250.8 161 73.9
Potri.005G124700 Populus trichocarpa HOM05D006571 ORTHO05D007771 2.8e-64 250.4 210 68.1
PGR102G1801 Punica granatum HOM05D006571 ORTHO05D007771 4.7e-64 249.6 210 68.6
Sabra05G0102400 Salix brachista HOM05D006571 ORTHO05D007771 6.2e-64 249.2 240 62.9
CARHR160190 Cardamine hirsuta HOM05D006571 ORTHO05D007771 8.1e-64 248.8 263 61.2
Nn1g05052 Nelumbo nucifera HOM05D006571 ORTHO05D007771 1.4e-63 248.1 211 69.2
AT3G50690 Arabidopsis thaliana HOM05D006571 ORTHO05D007771 5.2e-63 246.1 263 58.2
Oeu044138.1 Olea europaea HOM05D006571 ORTHO05D007771 2.0e-62 244.2 255 56.1
BcaNung00714 Brassica carinata HOM05D006571 ORTHO05D007771 4.4e-62 243.0 160 71.9
C01p02460 Brassica napus HOM05D006571 ORTHO05D007771 4.4e-62 243.0 160 71.9
BolC1t00234H Brassica oleracea HOM05D006571 ORTHO05D007771 4.4e-62 243.0 160 71.9
BraA01t00212Z Brassica rapa HOM05D006571 ORTHO05D007771 4.4e-62 243.0 160 71.9
Dinv26822 Davidia involucrata HOM05D006571 ORTHO05D007771 7.6e-62 242.3 209 65.6
Oeu024877.2 Olea europaea HOM05D006571 ORTHO05D007771 7.6e-62 242.3 160 69.4
A01p02240 Brassica napus HOM05D006571 ORTHO05D007771 2.2e-61 240.7 160 71.2
TAR628G0135 Trochodendron aralioides HOM05D006571 ORTHO05D007771 2.2e-61 240.7 147 78.9
BcaNung04428 Brassica carinata HOM05D006571 ORTHO05D007771 3.8e-61 240.0 160 70.6
Thhalv10025306m.g Eutrema salsugineum HOM05D006571 ORTHO05D007771 5.4e-60 236.1 217 63.1
PSO170G0995 Papaver somniferum HOM05D006571 ORTHO05D007771 3.9e-58 229.9 236 58.9
THA.LOC104804229 Tarenaya hassleriana HOM05D006571 ORTHO05D007771 5.1e-58 229.6 159 68.6
PSO764G0269 Papaver somniferum HOM05D006571 ORTHO05D007771 5.6e-57 226.1 232 58.2
Zm00001eb327200 Zea mays HOM05D006571 ORTHO05D007771 9.6e-57 225.3 162 67.9
Mapoly0013s0183 Marchantia polymorpha HOM05D006571 ORTHO05D007771 2.9e-53 213.8 160 66.2
SMO144G0154 Selaginella moellendorffii HOM05D006571 ORTHO05D007771 5.4e-52 209.5 160 64.4
Pp3c2_24900 Physcomitrium patens HOM05D006571 ORTHO05D007771 1.5e-46 191.4 159 58.5
Pp3c2_24950 Physcomitrium patens HOM05D006571 ORTHO05D007771 1.5e-46 191.4 159 58.5
Pp3c1_12220 Physcomitrium patens HOM05D006571 ORTHO05D007771 1.6e-43 181.4 220 51.8
Pp3c1_12230 Physcomitrium patens HOM05D006571 ORTHO05D007771 1.6e-43 181.4 220 51.8
AUR62007988 Chenopodium quinoa HOM05D006571 ORTHO05D007771 6.0e-43 179.5 109 78.9
SEGI_17530 Sequoiadendron giganteum HOM05D006571 ORTHO05D007771 1.5e-38 164.9 152 58.6
Zm00001eb217610 Zea mays HOM05D006571 ORTHO05D007771 6.3e-32 142.9 162 49.4
Zm00001eb052260 Zea mays HOM05D006571 ORTHO05D007771 6.7e-26 122.9 162 45.1
Os03g0668900 Oryza sativa ssp. japonica HOM05D006571 ORTHO05D007771 2.5e-25 120.9 161 43.5
Cre08.g363700 Chlamydomonas reinhardtii HOM05D006571 ORTHO05D007771 2.5e-20 104.4 155 40.0
Zm00001eb205800 Zea mays HOM05D006571 ORTHO05D007771 1.3e-16 92.0 139 39.6
Oeu000712.1 Olea europaea HOM05D006571 ORTHO05D007771 1.4e-12 78.6 57 64.9
Zm00001eb386610 Zea mays HOM05D006571 ORTHO05D007771 1.8e-10 71.6 95 46.3
MCO02G270 Micromonas commoda HOM05D006571 ORTHO05D007771 3.0e-10 70.9 156 31.4
Zm00001eb426950 Zea mays HOM05D022938 ORTHO05D007771 8.2e-08 62.8 82 45.1
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.6e-06 58.5 116 35.3


User provided reference genes

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