Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.0e-131 471.5 245 100.0
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 5.1e-126 454.5 278 88.1
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.5e-109 399.8 244 84.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 6.9e-107 391.0 277 75.8
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.5e-106 389.8 277 74.4
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.6e-106 389.0 279 74.9
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 5.8e-106 387.9 277 74.4
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.2e-105 386.0 277 73.6
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.9e-105 384.8 277 71.5
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 4.9e-105 384.8 275 73.8
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.5e-105 384.4 244 79.9
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 6.5e-105 384.4 277 72.2
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 6.5e-105 384.4 277 74.0
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.1e-104 383.6 277 71.8
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.4e-104 383.3 277 74.0
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 2.5e-104 382.5 276 73.2
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 5.5e-104 381.3 276 72.8
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 7.1e-104 380.9 277 70.4
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.2e-103 380.2 277 73.3
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.2e-103 380.2 251 77.7
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 2.1e-103 379.4 276 70.7
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 3.5e-103 378.6 277 72.9
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.0e-102 377.1 277 71.8
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.3e-102 376.7 276 71.4
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 5.1e-102 374.8 277 71.5
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 6.7e-102 374.4 244 79.5
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 6.7e-102 374.4 290 69.7
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 1.5e-101 373.2 257 73.2
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.9e-101 372.9 276 71.7
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 4.3e-101 371.7 278 70.9
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.8e-100 369.0 277 70.0
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 2.8e-100 369.0 277 70.8
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.8e-100 369.0 245 73.9
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 3.7e-100 368.6 277 68.2
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 4.8e-100 368.2 282 67.7
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.8e-99 366.3 265 70.6
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.4e-99 365.9 276 69.2
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 9.0e-99 364.0 276 68.5
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 3.4e-98 362.1 276 68.8
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.0e-97 360.5 277 67.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.3e-97 360.1 277 67.1
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 2.2e-97 359.4 275 69.1
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 8.5e-97 357.5 277 67.1
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.1e-96 357.1 330 59.7
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.1e-96 357.1 277 66.4
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.9e-96 356.3 276 67.8
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 7.2e-96 354.4 277 67.5
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.2e-95 353.6 313 62.6
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.2e-95 353.6 277 66.8
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 2.1e-95 352.8 276 66.7
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.7e-95 352.4 249 75.5
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 2.7e-95 352.4 277 66.4
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 3.6e-95 352.1 276 66.3
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 6.1e-95 351.3 272 67.3
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 7.9e-95 350.9 277 65.3
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.3e-94 350.1 276 66.7
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.3e-94 350.1 276 66.3
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.3e-94 350.1 277 65.7
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 3.0e-94 349.0 207 85.0
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.1e-94 348.2 244 73.0
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 5.1e-94 348.2 277 64.6
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 6.7e-94 347.8 244 72.5
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.1e-93 347.1 244 73.0
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.1e-93 347.1 277 67.1
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.1e-93 347.1 264 70.5
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 2.5e-93 345.9 275 66.9
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.3e-93 345.5 276 64.5
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 5.7e-93 344.7 282 67.0
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 7.4e-93 344.4 274 65.3
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 9.7e-93 344.0 277 65.7
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 4.8e-92 341.7 276 65.6
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 6.3e-92 341.3 245 73.5
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 6.3e-92 341.3 275 64.4
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 8.2e-92 340.9 305 63.0
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.5e-90 336.7 314 59.9
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 4.5e-90 335.1 299 61.2
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 7.7e-90 334.3 277 63.9
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.0e-89 334.0 279 63.1
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 1.7e-89 333.2 278 62.9
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.7e-89 333.2 279 63.1
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 2.9e-89 332.4 278 62.9
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 6.5e-89 331.3 313 58.5
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.1e-88 330.5 276 63.0
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 1.4e-88 330.1 256 67.6
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.7e-87 325.9 249 71.5
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 4.6e-87 325.1 243 70.0
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.3e-84 317.0 197 81.2
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.1e-83 312.4 208 74.5
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 6.1e-79 298.1 198 73.2
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 1.4e-78 297.0 247 63.6
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.6e-71 272.3 260 57.7
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 8.2e-68 261.2 275 57.8
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 5.9e-66 255.0 211 66.4
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 3.8e-65 252.3 207 66.2
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 6.5e-65 251.5 282 53.5
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 4.0e-62 242.3 264 48.5
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 5.7e-61 238.4 276 47.5
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 2.2e-60 236.5 189 69.3
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.3e-57 226.5 268 47.8
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.9e-56 223.4 274 47.4
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.6e-55 219.2 270 47.0
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.6e-50 203.8 270 45.6
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.4e-46 190.7 133 72.2
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.2e-46 188.7 124 75.8
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.7e-44 183.7 114 81.6
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 6.4e-44 181.8 144 68.1
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 3.9e-41 172.6 196 50.5
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 6.2e-39 165.2 186 52.2
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.7e-36 156.0 155 56.1
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.4e-35 154.1 188 46.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 3.2e-35 152.9 186 48.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 8.6e-33 144.8 226 42.5
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-32 144.1 212 42.5
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.9e-32 143.7 225 42.7
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.2e-30 135.6 104 71.2
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 5.4e-27 125.6 212 42.0
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 7.1e-27 125.2 136 53.7
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 7.1e-27 125.2 72 83.3
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 3.5e-26 122.9 79 81.0
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.9e-19 100.5 90 56.7
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 3.2e-19 99.8 208 30.8
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 9.2e-19 98.2 151 41.1
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 2.1e-18 97.1 208 32.2
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 7.3e-16 88.6 78 60.3
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 6.2e-15 85.5 207 30.4
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-14 84.7 128 40.6
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 2.0e-13 80.5 61 63.9
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 3.4e-13 79.7 77 54.5
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 7.6e-13 78.6 57 68.4
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.0e-09 68.2 36 91.7
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 3.1e-06 56.6 141 27.0
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 9.0e-06 55.1 36 75.0


User provided reference genes

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