Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.2e-155 553.1 286 100.0
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 4.7e-131 471.5 283 84.5
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.0e-130 470.3 277 86.3
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.0e-130 468.8 279 86.0
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.0e-130 468.4 277 86.3
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 6.8e-130 467.6 283 82.3
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 6.8e-130 467.6 283 83.7
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.0e-129 466.1 285 83.9
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.6e-129 465.7 280 84.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 4.4e-129 464.9 283 81.3
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.3e-128 463.4 277 85.2
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.8e-128 462.2 280 82.1
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 8.3e-128 460.7 277 84.8
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.1e-127 460.3 284 80.6
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 3.1e-127 458.8 283 81.6
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 4.1e-127 458.4 277 84.1
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 4.1e-127 458.4 283 81.6
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 7.0e-127 457.6 283 81.3
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 9.2e-127 457.2 277 81.6
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.7e-126 455.7 283 81.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.5e-126 454.9 278 88.1
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 5.0e-125 451.4 278 82.4
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.5e-124 449.9 279 80.3
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.9e-124 449.5 279 81.0
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 3.3e-124 448.7 293 78.5
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 7.3e-124 447.6 277 81.2
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 7.3e-124 447.6 277 81.9
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.2e-123 446.8 277 78.7
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.8e-123 445.7 298 77.9
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.8e-123 445.7 288 77.4
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.0e-123 444.1 279 78.9
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 3.0e-122 442.2 279 78.1
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 2.6e-121 439.1 284 77.1
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 4.4e-121 438.3 281 76.9
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 4.4e-121 438.3 275 80.4
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 9.8e-121 437.2 280 76.8
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-120 436.8 336 68.8
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.3e-120 436.8 279 78.9
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.7e-120 435.3 280 76.8
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 4.9e-120 434.9 280 76.1
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 7.0e-119 431.0 280 76.4
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 2.7e-118 429.1 280 75.0
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 2.7e-118 429.1 282 75.5
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 3.5e-118 428.7 281 75.1
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 4.6e-118 428.3 313 72.2
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 5.9e-118 427.9 277 79.1
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.0e-117 427.2 272 77.2
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.3e-117 426.8 280 76.4
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 2.3e-117 426.0 276 76.1
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.0e-117 425.6 282 74.5
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 3.9e-117 425.2 277 75.1
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 5.0e-117 424.9 280 75.4
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 5.0e-117 424.9 277 76.2
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 8.6e-117 424.1 281 75.8
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 8.6e-117 424.1 277 75.5
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.9e-116 422.9 314 71.3
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.2e-115 420.2 279 76.0
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.1e-115 419.5 274 75.2
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.3e-114 416.0 282 77.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.1e-114 415.6 275 74.5
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 5.8e-113 411.4 280 73.6
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 4.9e-112 408.3 256 78.9
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 6.4e-112 407.9 314 69.1
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 6.4e-112 407.9 249 84.7
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.9e-111 406.4 299 70.9
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.9e-111 406.4 277 73.6
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 2.0e-110 402.9 283 71.7
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 2.7e-110 402.5 317 66.6
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-110 402.1 282 71.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 3.5e-110 402.1 283 71.7
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 6.0e-110 401.4 282 71.6
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 8.6e-109 397.5 280 70.4
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 5.8e-105 384.8 276 72.8
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.7e-104 383.3 277 74.7
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.1e-103 380.6 251 74.9
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.0e-101 372.5 277 69.0
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 3.9e-101 372.1 247 74.5
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 7.3e-100 367.9 280 69.6
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 7.6e-97 357.8 277 70.0
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.3e-96 357.1 280 70.0
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.4e-95 353.6 280 67.9
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 3.2e-95 352.4 278 65.1
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 2.1e-94 349.7 298 62.8
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 4.3e-92 342.0 281 68.3
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.6e-91 339.0 283 63.6
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 8.1e-91 337.8 283 63.6
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.8e-90 336.7 283 62.9
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.5e-89 333.6 211 80.6
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 3.2e-87 325.9 281 64.1
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 6.0e-86 321.6 276 63.0
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.1e-84 317.4 189 86.2
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.5e-84 317.0 197 81.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 5.4e-79 298.5 198 73.2
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 7.1e-79 298.1 277 54.5
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.2e-78 297.4 264 55.7
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-76 290.8 275 55.3
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-74 284.3 274 55.1
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.8e-74 283.5 270 55.6
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.2e-71 272.7 260 57.7
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.0e-69 267.7 270 54.1
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 9.6e-68 261.2 164 78.7
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 3.4e-65 252.7 207 66.2
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 3.9e-61 239.2 318 47.5
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 8.2e-59 231.5 196 60.2
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 2.4e-58 229.9 159 71.7
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.6e-46 190.7 133 72.2
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 2.0e-44 183.7 114 81.6
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 7.4e-44 181.8 144 68.1
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 5.5e-39 165.6 186 52.2
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.7e-35 154.1 188 46.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.8e-35 153.3 186 48.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 7.7e-33 145.2 226 42.5
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 1.0e-32 144.8 240 34.6
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.7e-32 144.1 225 42.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.7e-32 144.1 212 42.5
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 6.1e-30 135.6 104 71.2
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.5e-28 131.0 271 32.1
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 4.8e-27 125.9 137 53.3
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 4.8e-27 125.9 212 42.0
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 8.2e-27 125.2 72 83.3
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 4.1e-26 122.9 79 81.0
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.0e-24 118.2 244 32.0
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 2.5e-23 113.6 69 79.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 5.5e-23 112.5 70 78.6
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 7.2e-23 112.1 60 88.3
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 6.8e-21 105.5 70 72.9
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 2.2e-19 100.5 90 56.7
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-18 98.2 151 41.1
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 8.5e-16 88.6 61 70.5
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-14 84.7 128 40.6
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.8e-13 80.9 78 53.8
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.8e-13 80.9 61 63.9
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 8.8e-13 78.6 57 68.4
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.1e-10 70.1 43 79.1
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 3.5e-09 66.6 34 91.2
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 7.8e-09 65.5 108 42.6
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 3.8e-08 63.2 39 71.8
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 3.6e-06 56.6 141 27.0


User provided reference genes

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