Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 5.4e-36 153.7 72 100.0
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 2.7e-19 98.2 69 62.3
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.0e-18 96.3 56 75.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.0e-18 94.7 56 73.2
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.0e-18 94.7 69 59.4
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 5.1e-18 94.0 69 59.4
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 8.7e-18 93.2 56 71.4
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.5e-17 92.4 54 74.1
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.5e-17 92.4 54 74.1
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.5e-17 92.4 69 58.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.5e-17 92.4 69 58.0
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 3.3e-17 91.3 55 70.9
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 4.3e-17 90.9 56 71.4
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.3e-17 90.9 53 73.6
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.3e-17 90.9 55 74.5
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 7.4e-17 90.1 53 73.6
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 7.4e-17 90.1 56 69.6
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 7.4e-17 90.1 56 67.9
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 7.4e-17 90.1 56 67.9
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.3e-16 89.4 56 64.3
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.3e-16 89.4 56 64.3
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 1.3e-16 89.4 55 72.7
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.3e-16 89.4 56 69.6
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.6e-16 89.0 56 67.9
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 2.2e-16 88.6 56 71.4
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 2.2e-16 88.6 56 69.6
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 2.8e-16 88.2 56 62.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.8e-16 88.2 53 69.8
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 2.8e-16 88.2 56 67.9
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.7e-16 87.8 51 74.5
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.7e-16 87.8 56 69.6
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 4.8e-16 87.4 56 66.1
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 4.8e-16 87.4 56 67.9
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 6.3e-16 87.0 56 67.9
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 8.2e-16 86.7 56 69.6
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 2.4e-15 85.1 56 67.9
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 3.1e-15 84.7 64 62.5
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 4.1e-15 84.3 57 70.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.1e-15 84.3 56 66.1
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 4.1e-15 84.3 56 64.3
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.3e-15 84.0 56 64.3
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 5.3e-15 84.0 53 67.9
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 5.3e-15 84.0 56 67.9
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 5.3e-15 84.0 56 67.9
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 5.3e-15 84.0 69 55.1
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 5.3e-15 84.0 69 55.1
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 5.3e-15 84.0 56 67.9
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 6.9e-15 83.6 56 66.1
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 6.9e-15 83.6 56 66.1
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 6.9e-15 83.6 56 67.9
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 6.9e-15 83.6 56 67.9
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 9.0e-15 83.2 56 66.1
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 9.0e-15 83.2 55 65.5
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 9.0e-15 83.2 53 69.8
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 9.0e-15 83.2 53 69.8
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-14 82.8 53 69.8
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-14 82.8 53 69.8
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-14 82.8 53 69.8
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.5e-14 82.4 56 64.3
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.5e-14 82.4 56 64.3
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.5e-14 82.4 56 67.9
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 2.0e-14 82.0 56 66.1
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.6e-14 81.6 56 57.1
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.6e-14 81.6 56 64.3
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 2.6e-14 81.6 53 67.9
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.6e-14 81.6 53 67.9
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.4e-14 81.3 56 62.5
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 3.4e-14 81.3 56 62.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 4.5e-14 80.9 64 59.4
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 4.5e-14 80.9 58 58.6
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 4.5e-14 80.9 56 66.1
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 5.9e-14 80.5 53 66.0
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 5.9e-14 80.5 53 66.0
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 5.9e-14 80.5 56 66.1
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 7.7e-14 80.1 56 60.7
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.0e-13 79.7 55 65.5
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.0e-13 79.7 55 56.4
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.3e-13 79.3 63 57.1
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.3e-13 79.3 53 64.2
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 1.3e-13 79.3 53 67.9
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.7e-13 79.0 53 64.2
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.7e-13 79.0 53 64.2
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.2e-13 78.6 56 60.7
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 2.2e-13 78.6 56 58.9
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 2.9e-13 78.2 53 64.2
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 2.9e-13 78.2 53 64.2
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.9e-13 78.2 56 60.7
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 5.0e-13 77.4 59 61.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 5.0e-13 77.4 56 62.5
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 6.5e-13 77.0 55 60.0
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 6.5e-13 77.0 55 60.0
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 6.5e-13 77.0 53 60.4
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 6.5e-13 77.0 53 60.4
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.4e-12 75.9 53 60.4
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.9e-12 75.5 55 60.0
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.9e-12 75.5 69 50.7
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.9e-12 75.5 56 57.1
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.9e-12 75.5 56 57.1
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 2.5e-12 75.1 53 58.5
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 3.2e-12 74.7 56 60.7
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 5.5e-12 73.9 60 55.0
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 9.4e-12 73.2 53 52.8
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.2e-11 72.8 55 58.2
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 1.2e-11 72.8 55 58.2
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.6e-11 72.4 62 53.2
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.6e-11 72.4 62 53.2
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.7e-11 71.6 56 57.1
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 3.6e-11 71.2 56 55.4
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 4.6e-11 70.9 60 53.3
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 6.1e-11 70.5 53 56.6
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.0e-10 69.7 58 46.6
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-06 56.2 29 82.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.0e-06 55.5 53 41.5


User provided reference genes

Program Settings