Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0064F.1_g034900 Hydrangea macrophylla HOM05D000252 ORTHO05D006173 7.0e-56 220.3 107 100.0
CSS0014928 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D006173 6.0e-15 84.3 54 77.8
Actinidia25893 Actinidia chinensis HOM05D000252 ORTHO05D006173 7.9e-15 84.0 54 77.8
TAR629G1221 Trochodendron aralioides HOM05D000252 ORTHO05D006173 1.9e-13 79.3 54 75.9
GSVIVG01035561001 Vitis vinifera HOM05D000252 ORTHO05D006173 2.5e-13 79.0 59 72.9
TAR622G0972 Trochodendron aralioides HOM05D000252 ORTHO05D006173 4.3e-13 78.2 54 74.1
Nitab4.5_0000573g0180 Nicotiana tabacum HOM05D000252 ORTHO05D006173 5.6e-13 77.8 57 66.7
PGSC0003DMG400008940 Solanum tuberosum HOM05D000252 ORTHO05D006173 9.6e-13 77.0 57 64.9
Migut.H01382 Erythranthe guttata HOM05D000252 ORTHO05D006173 2.8e-12 75.5 54 72.2
Prupe.8G264400 Prunus persica HOM05D000252 ORTHO05D006173 2.8e-12 75.5 57 71.9
vmacro00029 Vaccinium macrocarpon HOM05D000252 ORTHO05D006173 3.7e-12 75.1 54 68.5
CiPaw.11G106500 Carya illinoinensis HOM05D000252 ORTHO05D006173 4.8e-12 74.7 57 66.7
QL07p028735 Quercus lobata HOM05D000252 ORTHO05D006173 4.8e-12 74.7 54 70.4
Sabra16G0306700 Salix brachista HOM05D000252 ORTHO05D006173 4.8e-12 74.7 54 70.4
Atru.chr9.1817 Acer truncatum HOM05D000252 ORTHO05D006173 1.1e-11 73.6 57 66.7
Cc09_g09590 Coffea canephora HOM05D000252 ORTHO05D006173 1.1e-11 73.6 54 68.5
Haze_09230 Corylus avellana HOM05D000252 ORTHO05D006173 1.1e-11 73.6 55 69.1
Gorai.005G070800 Gossypium raimondii HOM05D000252 ORTHO05D006173 1.4e-11 73.2 58 63.8
Lj2C148T2 Lonicera japonica HOM05D000252 ORTHO05D006173 1.4e-11 73.2 54 75.9
Solyc09g010150.4 Solanum lycopersicum HOM05D000252 ORTHO05D006173 1.4e-11 73.2 57 63.2
EL10Ac7g17138 Beta vulgaris HOM05D000252 ORTHO05D006173 1.8e-11 72.8 58 63.8
Cfa010656 Carpinus fangiana HOM05D000252 ORTHO05D006173 1.8e-11 72.8 54 70.4
MD15G1141600 Malus domestica HOM05D000252 ORTHO05D006173 1.8e-11 72.8 54 70.4
Hund17503 Selenicereus undatus HOM05D000252 ORTHO05D006173 1.8e-11 72.8 53 69.8
Thecc.04G309700 Theobroma cacao HOM05D000252 ORTHO05D006173 2.4e-11 72.4 58 67.2
Sc02g0006460 Simmondsia chinensis HOM05D000252 ORTHO05D006173 3.1e-11 72.0 60 65.0
Sopen09g004890 Solanum pennellii HOM05D000252 ORTHO05D006173 3.1e-11 72.0 57 61.4
Peaxi162Scf00069g00511 Petunia axillaris HOM05D000252 ORTHO05D006173 4.0e-11 71.6 57 63.2
Peaxi162Scf01205g00153 Petunia axillaris HOM05D000252 ORTHO05D006173 4.0e-11 71.6 57 63.2
Rhsim02G0119800 Rhododendron simsii HOM05D000252 ORTHO05D006173 4.0e-11 71.6 54 66.7
Sc02g0006450 Simmondsia chinensis HOM05D000252 ORTHO05D006173 4.0e-11 71.6 60 63.3
Os09g0346600 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D006173 5.3e-11 71.2 57 61.4
Gohir.D02G062900 Gossypium hirsutum HOM05D000252 ORTHO05D006173 6.9e-11 70.9 58 62.1
Manes.01G013300 Manihot esculenta HOM05D000252 ORTHO05D006173 6.9e-11 70.9 64 59.4
PSO566G0118 Papaver somniferum HOM05D000252 ORTHO05D006173 6.9e-11 70.9 54 63.0
CAN.G397.84 Capsicum annuum HOM05D000252 ORTHO05D006173 9.0e-11 70.5 57 63.2
arahy.Tifrunner.gnm1.ann1.6GL1RL Arachis hypogaea HOM05D000252 ORTHO05D006173 1.2e-10 70.1 58 63.8
MSTRG.14758 Avicennia marina HOM05D000252 ORTHO05D006173 1.2e-10 70.1 54 72.2
Ciclev10001762m.g Citrus clementina HOM05D000252 ORTHO05D006173 1.2e-10 70.1 57 63.2
COL.COLO4_34295 Corchorus olitorius HOM05D000252 ORTHO05D006173 1.2e-10 70.1 61 59.0
Glyma.06G126500 Glycine max HOM05D000252 ORTHO05D006173 1.2e-10 70.1 58 60.3
TWI81G1050 Tripterygium wilfordii HOM05D000252 ORTHO05D006173 1.2e-10 70.1 53 67.9
CANSAT01G0545 Cannabis sativa HOM05D000252 ORTHO05D006173 1.5e-10 69.7 54 64.8
AUR62029802 Chenopodium quinoa HOM05D000252 ORTHO05D006173 1.5e-10 69.7 58 58.6
arahy.Tifrunner.gnm1.ann1.VK1FTJ Arachis hypogaea HOM05D000252 ORTHO05D006173 2.0e-10 69.3 58 63.8
PSO782G5386 Papaver somniferum HOM05D000252 ORTHO05D006173 2.0e-10 69.3 54 61.1
Sed0023253 Sechium edule HOM05D000252 ORTHO05D006173 2.0e-10 69.3 74 55.4
Ah.08g209090 Amaranthus hybridus HOM05D000252 ORTHO05D006173 2.6e-10 68.9 55 61.8
arahy.Tifrunner.gnm1.ann1.32U02B Arachis hypogaea HOM05D000252 ORTHO05D006173 2.6e-10 68.9 58 63.8
Lsat_1_v5_gn_5_112420 Lactuca sativa HOM05D000252 ORTHO05D006173 2.6e-10 68.9 61 59.0
Psat5g078840 Pisum sativum HOM05D000252 ORTHO05D006173 3.4e-10 68.6 58 58.6
Potri.001G453500 Populus trichocarpa HOM05D000252 ORTHO05D006173 3.4e-10 68.6 54 64.8
Nn2g15901 Nelumbo nucifera HOM05D000252 ORTHO05D006173 4.5e-10 68.2 57 64.9
AUR62006449 Chenopodium quinoa HOM05D000252 ORTHO05D006173 7.6e-10 67.4 58 56.9
Ca_16687_v3 Cicer arietinum L. HOM05D000252 ORTHO05D006173 7.6e-10 67.4 58 60.3
Medtr6g453040 Medicago truncatula HOM05D000252 ORTHO05D006173 7.6e-10 67.4 58 58.6
AL6G13700 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 1.0e-09 67.0 54 61.1
Oeu021515.1 Olea europaea HOM05D000252 ORTHO05D006173 1.0e-09 67.0 54 66.7
Sc02g0006470 Simmondsia chinensis HOM05D000252 ORTHO05D006173 1.0e-09 67.0 55 63.6
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 1.3e-09 66.6 59 59.3
THA.LOC104816406 Tarenaya hassleriana HOM05D000252 ORTHO05D006173 1.3e-09 66.6 63 55.6
Glyma.04G237500 Glycine max HOM05D000252 ORTHO05D006173 1.7e-09 66.2 58 56.9
Thhalv10007998m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 2.2e-09 65.9 59 62.7
AUR62026982 Chenopodium quinoa HOM05D000252 ORTHO05D006173 2.9e-09 65.5 58 55.2
unitig_61.g26060 Utricularia gibba HOM05D000252 ORTHO05D006173 2.9e-09 65.5 54 57.4
AT5G04070 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 3.8e-09 65.1 54 61.1
Sed0009717 Sechium edule HOM05D000252 ORTHO05D006173 4.9e-09 64.7 72 51.4
Aqoxy2G02648 Aquilegia oxysepala HOM05D000252 ORTHO05D006173 6.5e-09 64.3 54 64.8
FAN09G0108 Fragaria x ananassa HOM05D000252 ORTHO05D006173 6.5e-09 64.3 55 61.8
MBI04_g45215_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D006173 8.4e-09 63.9 57 63.2
Carub.0006s0303 Capsella rubella HOM05D000252 ORTHO05D006173 1.1e-08 63.5 57 59.6
Medtr3g009190 Medicago truncatula HOM05D000252 ORTHO05D006173 1.1e-08 63.5 58 56.9
RcHm_v2.0_Chr2g0131741 Rosa chinensis HOM05D000252 ORTHO05D006173 1.9e-08 62.8 57 59.6
VMungo1309G0630 Vigna mungo HOM05D000252 ORTHO05D006173 2.5e-08 62.4 58 56.9
FvH4_6g28040 Fragaria vesca HOM05D000252 ORTHO05D006173 3.2e-08 62.0 55 60.0
FAN05G2628 Fragaria x ananassa HOM05D001214 ORTHO05D006173 3.2e-08 62.0 55 60.0
FAN14G4665 Fragaria x ananassa HOM05D000252 ORTHO05D006173 3.2e-08 62.0 55 60.0
Lj1g0001797 Lotus japonicus HOM05D000252 ORTHO05D006173 3.2e-08 62.0 55 56.4
Cpa.g.sc87.4 Carica papaya HOM05D000252 ORTHO05D006173 4.2e-08 61.6 54 61.1
RcHm_v2.0_Chr5g0041951 Rosa chinensis HOM05D001077 ORTHO05D006173 4.2e-08 61.6 57 57.9
RcHm_v2.0_Chr6g0247031 Rosa chinensis HOM05D000252 ORTHO05D006173 4.2e-08 61.6 57 57.9
RcHm_v2.0_Chr7g0229791 Rosa chinensis HOM05D000252 ORTHO05D006173 4.2e-08 61.6 56 58.9
Zm00001eb310490 Zea mays HOM05D000252 ORTHO05D006173 4.2e-08 61.6 57 54.4
ATR0824G073 Amborella trichopoda HOM05D000252 ORTHO05D006173 7.1e-08 60.8 57 57.9
Carub.0006s1413 Capsella rubella HOM05D000252 ORTHO05D006173 7.1e-08 60.8 57 52.6
HPP92_005571 Vanilla planifolia HOM05D000252 ORTHO05D006173 7.1e-08 60.8 53 58.5
AT5G15940 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 1.2e-07 60.1 72 48.6
BcaNung02217 Brassica carinata HOM05D000252 ORTHO05D006173 1.2e-07 60.1 57 56.1
CARHR197370 Cardamine hirsuta HOM05D000252 ORTHO05D006173 1.2e-07 60.1 57 50.9
CARHR209200 Cardamine hirsuta HOM05D000252 ORTHO05D006173 1.2e-07 60.1 54 61.1
Lalb_Chr23g0271541 Lupinus albus HOM05D000252 ORTHO05D006173 1.2e-07 60.1 58 55.2
Phvul.009G054600 Phaseolus vulgaris HOM05D000252 ORTHO05D006173 1.2e-07 60.1 58 53.4
C02p08070 Brassica napus HOM05D005209 ORTHO05D006188 2.1e-07 59.3 57 56.1
BolC2t06729H Brassica oleracea HOM05D005209 ORTHO05D006188 2.1e-07 59.3 57 56.1
Thhalv10013899m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 2.1e-07 59.3 56 53.6
SalBow7G4413 Salvia bowleyana HOM05D000252 ORTHO05D006173 2.1e-07 59.3 54 59.3
Aa31LG11G13660 Aethionema arabicum HOM05D000252 ORTHO05D006173 2.7e-07 58.9 54 55.6
BcaC03g18461 Brassica carinata HOM05D000252 ORTHO05D006173 3.5e-07 58.5 57 54.4
ClCG01G007270 Citrullus lanatus HOM05D000252 ORTHO05D006173 3.5e-07 58.5 55 58.2
CsaV3_5G018710 Cucumis sativus L. HOM05D000252 ORTHO05D006173 4.6e-07 58.2 58 53.4
Medtr3g091070 Medicago truncatula HOM05D000252 ORTHO05D006173 4.6e-07 58.2 58 53.4
Psat5g078720 Pisum sativum HOM05D000252 ORTHO05D006173 6.0e-07 57.8 52 53.8
Aa31LG1G21250 Aethionema arabicum HOM05D000252 ORTHO05D006173 7.9e-07 57.4 57 56.1
A10p32050 Brassica napus HOM05D000087 ORTHO05D006949 7.9e-07 57.4 55 54.5
HanXRQChr06g0172631 Helianthus annuus HOM05D000252 ORTHO05D006173 7.9e-07 57.4 59 59.3
Sp6g28170 Schrenkiella parvula HOM05D000252 ORTHO05D006173 7.9e-07 57.4 57 56.1
Eucgr.E01111 Eucalyptus grandis HOM05D000252 ORTHO05D006173 1.0e-06 57.0 54 53.7
Eucgr.E01120 Eucalyptus grandis HOM05D000252 ORTHO05D006173 1.0e-06 57.0 54 53.7
A02p03310 Brassica napus HOM05D005209 ORTHO05D006188 1.3e-06 56.6 57 54.4
C09p72770 Brassica napus HOM05D000087 ORTHO05D006949 1.3e-06 56.6 55 54.5
BolC9t60015H Brassica oleracea HOM05D000087 ORTHO05D006949 1.3e-06 56.6 55 54.5
BraA10t45249Z Brassica rapa HOM05D000252 ORTHO05D006173 1.3e-06 56.6 55 54.5
CDE06G0780 Ceratophyllum demersum HOM05D000085 ORTHO05D008953 1.3e-06 56.6 67 47.8
BraA02t05302Z Brassica rapa HOM05D000252 ORTHO05D006173 1.8e-06 56.2 57 52.6
Haze_06490 Corylus avellana HOM05D000252 ORTHO05D006173 1.8e-06 56.2 46 65.2
Thhalv10013855m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 1.8e-06 56.2 54 55.6
SEGI_02143 Sequoiadendron giganteum HOM05D000252 ORTHO05D006173 1.8e-06 56.2 58 53.4
Pp3c26_3200 Physcomitrium patens HOM05D000252 ORTHO05D006173 2.3e-06 55.8 53 54.7
Mapoly0004s0285 Marchantia polymorpha HOM05D000252 ORTHO05D006173 3.0e-06 55.5 53 54.7
Sc02g0006480 Simmondsia chinensis HOM05D000252 ORTHO05D006173 6.7e-06 54.3 45 64.4


User provided reference genes

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