Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.2e-112 409.8 202 100.0
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 4.5e-112 407.9 201 100.0
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 1.9e-86 322.8 202 76.2
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 6.3e-82 307.8 202 72.8
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 3.5e-80 302.0 202 70.8
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 3.3e-78 295.4 202 68.8
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 1.6e-77 293.1 198 69.2
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 2.8e-77 292.4 201 69.2
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 4.7e-77 291.6 201 70.1
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 1.0e-76 290.4 202 70.3
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 8.9e-76 287.3 201 65.7
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.5e-75 286.6 202 69.8
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 2.6e-75 285.8 200 70.0
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 1.3e-74 283.5 203 68.5
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 1.1e-73 280.4 197 67.5
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 5.4e-73 278.1 202 65.3
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 7.0e-73 277.7 200 64.0
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 1.6e-72 276.6 201 62.7
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 2.3e-71 272.7 202 64.4
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 2.9e-71 272.3 200 62.5
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 2.9e-71 272.3 199 65.3
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 2.9e-71 272.3 202 64.4
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 1.1e-70 270.4 200 62.5
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.5e-70 270.0 200 64.5
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 5.6e-70 268.1 202 62.4
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 5.6e-70 268.1 202 61.4
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 9.5e-70 267.3 202 63.9
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 4.7e-69 265.0 202 63.4
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 6.1e-69 264.6 202 59.4
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 1.0e-68 263.8 202 62.9
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 1.8e-68 263.1 199 60.8
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 4.0e-68 261.9 200 63.0
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 6.8e-68 261.2 200 61.0
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 1.2e-67 260.4 202 61.9
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 2.0e-67 259.6 202 64.4
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 2.6e-67 259.2 200 61.0
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 2.6e-67 259.2 194 62.4
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 3.4e-67 258.8 202 59.4
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 3.4e-67 258.8 202 58.9
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 9.8e-67 257.3 196 61.7
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 9.8e-67 257.3 196 63.3
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 1.7e-66 256.5 202 61.4
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 3.7e-66 255.4 200 62.5
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 4.9e-66 255.0 194 62.4
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 1.1e-65 253.8 194 61.3
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 1.4e-65 253.4 201 59.7
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 2.4e-65 252.7 188 64.9
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 4.1e-65 251.9 200 59.5
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 9.2e-65 250.8 195 61.5
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 2.7e-64 249.2 185 62.7
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 3.5e-64 248.8 200 59.0
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 4.6e-64 248.4 198 61.6
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 1.0e-63 247.3 200 58.0
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 3.0e-63 245.7 194 60.3
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 6.6e-63 244.6 207 58.5
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 3.3e-62 242.3 202 61.4
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 4.3e-62 241.9 194 59.8
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 5.6e-62 241.5 188 60.1
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 1.6e-61 240.0 160 73.8
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 3.6e-61 238.8 194 59.3
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 8.0e-61 237.7 202 57.9
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 1.1e-60 237.3 189 62.4
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 1.1e-60 237.3 202 60.9
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 3.1e-60 235.7 185 60.5
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 3.1e-60 235.7 196 56.1
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 3.1e-60 235.7 185 60.0
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.0e-59 233.0 197 58.4
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 5.8e-59 231.5 202 56.9
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.3e-58 230.3 202 56.4
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 8.3e-58 227.6 203 56.2
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 1.9e-57 226.5 202 50.5
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 3.5e-56 222.2 204 53.4
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 8.6e-55 217.6 202 52.5
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 2.5e-54 216.1 202 52.5
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 3.3e-54 215.7 183 57.4
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 2.1e-53 213.0 214 54.2
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 6.2e-53 211.5 197 52.3
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 1.4e-52 210.3 199 51.8
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 1.4e-52 210.3 199 51.8
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 5.2e-52 208.4 355 39.7
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 2.0e-51 206.5 205 54.1
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 9.9e-51 204.1 200 46.5
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 9.9e-51 204.1 165 57.6
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.1e-49 198.7 294 39.8
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 3.0e-47 192.6 245 46.1
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 1.5e-46 190.3 141 64.5
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.2e-45 187.2 197 46.7
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 1.1e-44 184.1 142 61.3
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 2.4e-44 183.0 188 47.9
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 8.9e-44 181.0 126 64.3
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 4.4e-43 178.7 139 63.3
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 9.9e-43 177.6 139 59.7
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 3.6e-37 159.1 151 51.7
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 1.4e-36 157.1 142 62.0
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 4.4e-35 152.1 232 43.1
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 9.3e-33 144.4 114 62.3
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 8.7e-31 137.9 88 67.0
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 8.7e-31 137.9 224 42.0
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 3.1e-28 129.4 88 65.9
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 3.9e-23 112.5 100 55.0
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.3e-21 107.5 100 53.0
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 7.6e-19 98.2 109 45.0
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 1.0e-18 97.8 165 32.1
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 3.2e-17 92.8 203 31.5
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 4.2e-17 92.4 61 65.6
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 1.6e-16 90.5 114 42.1
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 1.8e-15 87.0 179 29.6
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 2.0e-11 73.6 79 50.6
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 4.2e-09 65.9 54 59.3
arahy.Tifrunner.gnm1.ann1.HW4B1R Arachis hypogaea HOM05D006689 ORTHO05D008349 4.3e-06 55.8 36 66.7
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 7.4e-06 55.1 47 61.7


User provided reference genes

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