Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 4.0e-173 611.3 301 100.0
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 3.4e-132 475.3 299 75.6
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 3.0e-128 462.2 300 72.3
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 2.0e-124 449.5 301 70.1
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 2.2e-123 446.0 296 70.6
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 2.7e-121 439.1 301 70.1
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 6.0e-121 438.0 297 68.4
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 7.9e-121 437.6 299 67.9
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 6.7e-120 434.5 298 68.1
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 1.3e-118 430.3 299 68.9
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 3.7e-118 428.7 297 68.0
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 8.2e-118 427.6 289 69.6
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 1.4e-117 426.8 297 66.7
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.2e-116 423.7 297 67.3
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 7.6e-116 421.0 292 68.8
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 1.0e-115 420.6 301 63.8
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 5.0e-115 418.3 296 67.9
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 8.5e-115 417.5 294 67.3
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 8.5e-115 417.5 301 64.1
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 7.2e-114 414.5 299 65.9
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 4.6e-113 411.8 301 62.5
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 6.7e-112 407.9 201 100.0
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 1.5e-111 406.8 298 66.1
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 1.9e-111 406.4 297 63.3
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 1.3e-110 403.7 301 63.1
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 2.2e-110 402.9 295 62.7
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 6.3e-110 401.4 295 64.4
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 1.1e-109 400.6 295 62.7
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 1.4e-109 400.2 292 63.0
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 1.8e-109 399.8 300 60.0
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 4.1e-109 398.7 292 63.4
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 4.1e-109 398.7 301 63.1
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 4.1e-109 398.7 301 64.5
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 5.3e-109 398.3 294 63.9
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 6.9e-109 397.9 300 59.7
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.2e-108 397.1 294 62.2
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 2.0e-108 396.4 298 61.7
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.4e-108 395.6 293 64.2
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 4.5e-108 395.2 291 62.5
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 4.5e-108 395.2 301 62.5
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 5.9e-108 394.8 297 63.3
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 7.7e-108 394.4 296 64.5
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 1.0e-107 394.0 292 63.0
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 2.2e-107 392.9 294 61.6
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 6.5e-107 391.3 294 61.9
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 8.5e-107 391.0 292 61.6
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 1.1e-106 390.6 283 63.6
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 1.1e-106 390.6 281 66.9
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 1.1e-106 390.6 437 49.7
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 3.2e-106 389.0 292 62.0
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 4.2e-106 388.7 298 60.4
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 9.4e-106 387.5 297 62.3
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 1.6e-105 386.7 292 62.0
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.1e-105 386.3 297 62.3
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 1.4e-104 383.6 293 59.0
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 2.3e-104 382.9 294 62.9
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 3.0e-104 382.5 306 60.8
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 3.9e-104 382.1 294 59.5
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 5.1e-104 381.7 292 61.3
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.1e-103 380.6 283 62.5
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 2.0e-103 379.8 292 58.6
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 4.5e-100 368.6 284 63.4
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 1.3e-99 367.1 300 58.0
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 9.4e-98 360.9 295 53.9
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 1.2e-97 360.5 281 60.5
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 2.7e-97 359.4 283 58.0
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 4.7e-97 358.6 291 59.5
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 6.1e-97 358.2 296 57.1
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 5.7e-95 351.7 254 64.2
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 1.3e-94 350.5 311 57.2
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.3e-94 348.2 389 47.6
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 1.8e-93 346.7 301 54.2
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 3.1e-93 345.9 291 55.7
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 1.3e-91 340.5 283 58.0
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 6.5e-91 338.2 255 62.7
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 4.2e-90 335.5 293 53.9
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 1.2e-89 334.0 261 59.4
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 2.1e-89 333.2 344 52.6
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 8.8e-88 327.8 239 64.9
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.6e-87 326.2 257 61.1
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 8.2e-86 321.2 235 64.3
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 2.0e-84 316.6 241 60.6
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 4.5e-84 315.5 232 62.9
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 3.8e-83 312.4 301 50.5
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 1.1e-82 310.8 291 48.8
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 1.2e-81 307.4 215 67.4
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.4e-80 303.9 249 57.4
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 3.7e-78 295.8 299 52.2
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 9.1e-77 291.2 338 49.4
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.2e-73 280.8 210 62.4
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.3e-70 270.8 282 47.2
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 1.2e-68 264.2 204 61.3
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.2e-65 254.2 305 43.0
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 1.3e-54 217.6 405 37.8
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.7e-54 217.2 195 53.8
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 4.9e-54 215.7 280 45.4
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 8.3e-54 214.9 174 58.0
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 3.5e-52 209.5 195 51.8
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 1.8e-48 197.2 303 37.6
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 8.9e-48 194.9 143 62.9
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 1.2e-47 194.5 298 37.6
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 7.5e-47 191.8 162 56.2
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 2.2e-46 190.3 146 60.3
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 6.0e-44 182.2 301 34.9
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.3e-43 181.0 126 64.3
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 3.4e-39 166.4 125 60.8
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 2.1e-36 157.1 142 62.0
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 2.7e-36 156.8 104 65.4
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 3.8e-30 136.3 87 66.7
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 6.4e-30 135.6 102 57.8
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 2.3e-27 127.1 86 62.8
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 1.9e-26 124.0 342 28.9
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 1.6e-25 120.9 272 30.5
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 4.8e-25 119.4 98 56.1
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 4.9e-22 109.4 76 61.8
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 1.2e-20 104.8 300 27.3
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 1.1e-16 91.7 60 66.7
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 4.5e-15 86.3 46 91.3
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 6.2e-09 65.9 54 59.3
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 3.4e-07 60.1 43 62.8
arahy.Tifrunner.gnm1.ann1.HW4B1R Arachis hypogaea HOM05D006689 ORTHO05D008349 6.5e-06 55.8 36 66.7


User provided reference genes

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