Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.8e-188 661.8 326 100.0
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 9.8e-125 450.7 335 70.1
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 3.1e-123 445.7 336 70.2
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 8.9e-110 401.0 332 64.2
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 8.9e-110 401.0 332 64.2
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 3.3e-104 382.5 352 57.4
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 7.3e-104 381.3 334 62.0
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.1e-102 377.5 337 60.8
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.1e-102 377.5 352 57.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.4e-101 372.5 326 58.9
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.7e-97 360.1 333 57.7
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 8.6e-97 357.8 328 58.2
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 8.6e-97 357.8 330 58.5
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.5e-96 356.3 340 56.2
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.3e-96 355.9 330 58.2
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 4.3e-96 355.5 331 57.1
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 6.2e-95 351.7 332 59.9
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-94 349.4 332 58.1
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.5e-93 347.1 332 57.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 7.5e-93 344.7 330 54.8
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 9.9e-93 344.4 334 56.6
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.2e-92 343.2 334 56.6
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 3.7e-92 342.4 332 58.4
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.4e-91 340.5 332 56.3
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.4e-91 340.5 334 56.0
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.9e-91 340.1 332 56.6
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.4e-91 339.7 340 54.1
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 2.7e-90 336.3 332 55.1
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.3e-89 333.2 340 54.7
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 2.3e-89 333.2 335 56.4
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 6.6e-89 331.6 348 54.9
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 6.6e-89 331.6 339 54.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.3e-88 329.3 335 55.8
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 3.3e-88 329.3 339 53.7
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 3.3e-88 329.3 339 53.7
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.3e-88 328.9 332 54.8
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.1e-87 326.6 335 55.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.8e-87 326.2 329 55.0
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.6e-87 325.9 336 56.5
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 4.7e-87 325.5 335 55.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 8.1e-87 324.7 334 53.6
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.1e-86 324.3 331 52.6
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.1e-86 324.3 329 55.3
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.4e-86 323.9 335 54.9
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.4e-86 323.2 327 53.8
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 3.1e-86 322.8 336 53.6
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 8.9e-86 321.2 327 52.3
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 2.6e-85 319.7 334 54.5
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 9.9e-85 317.8 337 52.8
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.3e-84 317.4 336 53.3
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.3e-84 317.4 333 53.5
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.2e-84 316.6 331 53.8
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 2.2e-84 316.6 333 54.1
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.9e-84 315.5 339 51.6
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.9e-84 315.5 325 52.6
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.1e-83 314.3 334 56.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.4e-83 313.9 332 52.1
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.4e-83 313.2 335 54.0
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 9.2e-83 311.2 335 52.8
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 9.2e-83 311.2 334 49.7
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.2e-82 310.8 339 51.3
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.6e-82 308.9 334 52.7
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 6.0e-82 308.5 326 54.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.3e-81 307.4 336 52.4
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 2.3e-81 306.6 335 52.2
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.0e-81 306.2 328 51.2
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 3.0e-81 306.2 339 51.6
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 8.7e-81 304.7 345 49.9
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.5e-80 303.9 332 51.5
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-80 302.8 332 54.2
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.6e-79 300.4 295 51.9
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 2.8e-79 299.7 325 51.1
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 3.6e-79 299.3 340 48.8
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 3.6e-79 299.3 340 48.8
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.2e-79 298.5 366 49.5
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.2e-79 298.5 366 49.5
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-78 297.7 366 49.5
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.4e-78 297.4 248 57.3
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.8e-78 297.0 270 57.0
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 5.2e-78 295.4 340 48.5
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.5e-77 293.9 345 48.7
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 9.9e-77 291.2 354 47.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.7e-76 290.4 348 47.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.9e-76 289.7 255 57.6
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.1e-75 287.7 240 59.2
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.4e-75 287.3 327 50.5
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.4e-75 286.6 327 48.6
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.2e-75 286.2 326 48.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.2e-75 286.2 305 50.8
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 3.2e-75 286.2 329 50.5
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.2e-75 285.8 333 49.2
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 9.3e-75 284.6 273 54.6
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 4.6e-74 282.3 329 50.5
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.0e-73 281.2 327 49.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.0e-73 281.2 329 49.5
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.3e-73 280.8 326 49.4
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.3e-73 280.0 238 56.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 3.9e-73 279.3 325 48.3
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 6.6e-73 278.5 330 49.4
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 8.7e-73 278.1 331 47.7
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 7.3e-72 275.0 330 48.5
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.6e-71 273.9 325 47.7
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.8e-71 273.1 336 48.8
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.8e-71 272.3 326 47.2
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 8.1e-71 271.6 330 49.4
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-70 271.2 330 49.1
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-70 271.2 314 48.1
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.8e-70 270.4 325 46.5
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.8e-70 270.4 330 49.4
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 4.0e-70 269.2 331 49.2
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 5.3e-70 268.9 329 47.4
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.2e-69 267.7 325 45.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.5e-69 267.3 327 47.7
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 5.8e-69 265.4 327 46.8
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.8e-69 265.4 373 44.0
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 5.8e-69 265.4 328 45.1
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 5.8e-69 265.4 273 50.9
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.7e-68 263.8 325 45.2
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.9e-68 263.1 325 45.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 8.4e-68 261.5 332 46.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 8.4e-68 261.5 325 44.0
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.4e-67 260.8 346 45.4
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 5.4e-67 258.8 330 46.4
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.2e-66 257.7 325 45.2
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.8e-65 253.8 333 45.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 8.7e-65 251.5 325 44.3
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 4.3e-64 249.2 325 44.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 7.4e-64 248.4 276 49.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.8e-63 245.7 261 51.7
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.1e-62 244.6 232 54.3
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.4e-62 244.2 276 51.8
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 6.9e-62 241.9 326 43.3
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 9.0e-62 241.5 325 43.1
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 2.9e-60 236.5 296 46.3
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 8.4e-60 235.0 255 48.6
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 5.5e-59 232.3 338 40.8
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.7e-58 229.9 246 51.2
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 2.3e-57 226.9 326 42.9
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 3.3e-56 223.0 299 43.5
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 9.6e-56 221.5 299 43.5
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 9.6e-56 221.5 299 43.5
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.6e-53 213.4 335 40.3
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 9.3e-51 204.9 336 41.1
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.3e-49 201.1 323 40.2
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.6e-47 194.1 213 52.1
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.1e-46 189.5 153 68.6
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.5e-45 187.6 409 33.3
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.9e-43 180.6 181 49.7
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 6.7e-41 172.2 206 51.5
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 2.8e-39 166.8 325 36.3
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.8e-38 164.1 187 47.1
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 7.7e-37 158.7 296 36.5
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 1.0e-36 158.3 132 56.1
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.8e-33 147.5 155 52.3
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.1e-32 144.8 233 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.5e-29 134.4 248 33.9
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 2.6e-29 133.7 214 39.3
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.3e-28 131.3 231 37.2
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.8e-25 120.9 147 47.6
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 3.9e-25 119.8 117 52.1
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 9.7e-24 115.2 77 64.9
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.4e-22 111.3 154 42.2
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.4e-22 110.5 117 48.7
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.5e-21 106.7 115 51.3
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.5e-20 102.4 119 49.6
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 8.0e-18 95.5 105 42.9
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.3e-17 94.0 86 53.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 5.2e-17 92.8 107 44.9
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.5e-16 91.3 131 38.9
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 1.4e-14 84.7 147 38.1
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.6e-13 81.3 285 25.3
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.6e-13 81.3 100 46.0
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 2.7e-13 80.5 189 28.6
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 5.0e-12 76.3 98 40.8
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 2.5e-11 73.9 57 63.2
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 9.4e-11 72.0 82 45.1
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.2e-10 71.6 293 24.2
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.1e-10 70.9 65 56.9
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.0e-09 68.6 125 43.2
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 1.0e-09 68.6 59 52.5
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 1.5e-08 64.7 43 72.1
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 4.8e-07 59.7 64 46.9


User provided reference genes

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