Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0063F.1_g034490 Hydrangea macrophylla HOM05D001094 ORTHO05D228351 8.2e-19 95.9 44 100.0
Hma1.2p1_0129F.1_g060370 Hydrangea macrophylla HOM05D001094 ORTHO05D001050 6.3e-11 69.7 49 67.3
Dinv14635 Davidia involucrata HOM05D001094 ORTHO05D001050 9.1e-10 65.9 49 65.3
Lj4C632G4 Lonicera japonica HOM05D001094 ORTHO05D001050 3.5e-09 63.9 49 61.2
CSS0040892 Camellia sinensis var. sinensis HOM05D001094 ORTHO05D001050 2.2e-08 61.2 49 61.2
DCAR_003558 Daucus carota HOM05D001094 ORTHO05D001050 2.2e-08 61.2 49 61.2
Lj7A343G54 Lonicera japonica HOM05D001094 ORTHO05D001050 2.2e-08 61.2 49 63.3
Actinidia03461 Actinidia chinensis HOM05D001094 ORTHO05D001050 2.9e-08 60.8 49 59.2
Actinidia29474 Actinidia chinensis HOM05D001094 ORTHO05D001050 2.9e-08 60.8 49 59.2
DCAR_028207 Daucus carota HOM05D001094 ORTHO05D001050 3.8e-08 60.5 49 61.2
CSS0040302 Camellia sinensis var. sinensis HOM05D001094 ORTHO05D001050 5.0e-08 60.1 49 61.2
Aa31LG9G14190 Aethionema arabicum HOM05D001094 ORTHO05D001050 6.5e-08 59.7 49 55.1
CANSAT25G3557 Cannabis sativa HOM05D001094 ORTHO05D001050 6.5e-08 59.7 49 57.1
ClCG11G015830 Citrullus lanatus HOM05D001094 ORTHO05D001050 6.5e-08 59.7 49 59.2
MD00G1029100 Malus domestica HOM05D001094 ORTHO05D001050 6.5e-08 59.7 49 59.2
Peaxi162Scf00051g01311 Petunia axillaris HOM05D001094 ORTHO05D001050 6.5e-08 59.7 49 61.2
Prupe.1G493800 Prunus persica HOM05D001094 ORTHO05D001050 6.5e-08 59.7 49 57.1
SalBow2G0380 Salvia bowleyana HOM05D001094 ORTHO05D001050 6.5e-08 59.7 49 57.1
FvH4_2g27350 Fragaria vesca HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 55.1
FAN15G1963 Fragaria x ananassa HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 55.1
FAN20G3201 Fragaria x ananassa HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 55.1
FAN24G1466 Fragaria x ananassa HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 55.1
MD15G1345700 Malus domestica HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 57.1
Potri.005G179300 Populus trichocarpa HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 57.1
RcHm_v2.0_Chr4g0425691 Rosa chinensis HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 55.1
RcHm_v2.0_Chr6g0296191 Rosa chinensis HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 55.1
Solyc06g060250.3 Solanum lycopersicum HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 59.2
Sopen06g020370 Solanum pennellii HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 59.2
PGSC0003DMG400017568 Solanum tuberosum HOM05D001094 ORTHO05D001050 8.5e-08 59.3 49 59.2
Cfa018575 Carpinus fangiana HOM05D001094 ORTHO05D001050 1.1e-07 58.9 49 57.1
Ciclev10000949m.g Citrus clementina HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
FvH4_1g25230 Fragaria vesca HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
FAN19G2581 Fragaria x ananassa HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
FAN23G2000 Fragaria x ananassa HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
FAN26G1289 Fragaria x ananassa HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
FAN28G2717 Fragaria x ananassa HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
Gohir.A05G236301 Gossypium hirsutum HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 57.1
Gohir.A06G045700 Gossypium hirsutum HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 57.1
Gohir.D05G238500 Gossypium hirsutum HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 57.1
Gohir.D06G046200 Gossypium hirsutum HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 57.1
Gorai.009G247000 Gossypium raimondii HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 57.1
Gorai.010G051500 Gossypium raimondii HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 57.1
PSO170G3879 Papaver somniferum HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
PSO528G0262 Papaver somniferum HOM05D001094 ORTHO05D001050 1.5e-07 58.5 49 55.1
Actinidia15236 Actinidia chinensis HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 57.1
MELO3C010493.2 Cucumis melo HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 55.1
Duzib041G0716 Durio zibethinus HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 57.1
Duzib116G0913 Durio zibethinus HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 57.1
MD15G1136900 Malus domestica HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 57.1
MD15G1137200 Malus domestica HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 57.1
Oeu028556.1 Olea europaea HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 57.1
Oeu028557.1 Olea europaea HOM05D001094 ORTHO05D001050 1.9e-07 58.2 49 55.1
CsaV3_4G028150 Cucumis sativus L. HOM05D001094 ORTHO05D001050 2.5e-07 57.8 49 55.1
Dinv08207 Davidia involucrata HOM05D001094 ORTHO05D001050 2.5e-07 57.8 49 59.2
Oeu059450.2 Olea europaea HOM05D001094 ORTHO05D001050 2.5e-07 57.8 30 83.3
Prupe.4G279800 Prunus persica HOM05D001094 ORTHO05D001050 2.5e-07 57.8 49 55.1
RcHm_v2.0_Chr2g0123141 Rosa chinensis HOM05D001094 ORTHO05D001050 2.5e-07 57.8 49 55.1
Hund17305 Selenicereus undatus HOM05D001094 ORTHO05D001050 2.5e-07 57.8 49 55.1
Sc02g0004800 Simmondsia chinensis HOM05D001094 ORTHO05D001050 2.5e-07 57.8 49 59.2
vmacro00843 Vaccinium macrocarpon HOM05D001094 ORTHO05D001050 2.5e-07 57.8 30 86.7
VMungo0251G2647 Vigna mungo HOM05D001094 ORTHO05D001050 2.5e-07 57.8 49 57.1
Aqoxy6G00249 Aquilegia oxysepala HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 55.1
arahy.Tifrunner.gnm1.ann1.BZ0RB3 Arachis hypogaea HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 57.1
Haze_17505 Corylus avellana HOM05D001094 ORTHO05D001050 3.2e-07 57.4 30 86.7
Eucgr.F03800 Eucalyptus grandis HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 55.1
Gohir.A02G072700 Gossypium hirsutum HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 55.1
Gohir.D02G079800 Gossypium hirsutum HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 55.1
Gorai.005G089100 Gossypium raimondii HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 55.1
Lj4g0010080 Lotus japonicus HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 57.1
Nitab4.5_0000322g0120 Nicotiana tabacum HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 55.1
Nitab4.5_0003719g0020 Nicotiana tabacum HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 55.1
TAR376G0164 Trochodendron aralioides HOM05D001094 ORTHO05D001050 3.2e-07 57.4 49 57.1
vmacro00844 Vaccinium macrocarpon HOM05D001094 ORTHO05D001050 3.2e-07 57.4 30 83.3
CANSAT01G0775 Cannabis sativa HOM05D001094 ORTHO05D001050 4.2e-07 57.0 49 55.1
MELO3C010494.2 Cucumis melo HOM05D001094 ORTHO05D001050 4.2e-07 57.0 49 55.1
Lsat_1_v5_gn_6_97140 Lactuca sativa HOM05D001094 ORTHO05D001050 4.2e-07 57.0 49 55.1
Phvul.002G275200 Phaseolus vulgaris HOM05D001094 ORTHO05D001050 4.2e-07 57.0 49 55.1
Potri.005G069800 Populus trichocarpa HOM05D001094 ORTHO05D001050 4.2e-07 57.0 49 53.1
QL09p033984 Quercus lobata HOM05D001094 ORTHO05D001050 4.2e-07 57.0 49 55.1
SGA_v2.0_scaffold28G11989 Striga asiatica HOM05D001094 ORTHO05D001050 4.2e-07 57.0 49 55.1
EL10Ac1g01037 Beta vulgaris HOM05D001094 ORTHO05D001050 5.5e-07 56.6 30 83.3
Lj1g0013281 Lotus japonicus HOM05D001094 ORTHO05D001050 5.5e-07 56.6 49 53.1
Hund07219 Selenicereus undatus HOM05D001094 ORTHO05D001050 5.5e-07 56.6 49 53.1
AUR62014317 Chenopodium quinoa HOM05D001094 ORTHO05D001050 7.2e-07 56.2 30 80.0
Ca_17615_v3 Cicer arietinum L. HOM05D001094 ORTHO05D001050 7.2e-07 56.2 49 51.0
Migut.C01117 Erythranthe guttata HOM05D001094 ORTHO05D001050 7.2e-07 56.2 49 53.1
Rhsim11G0067800 Rhododendron simsii HOM05D001094 ORTHO05D001050 7.2e-07 56.2 30 80.0
RcHm_v2.0_Chr6g0296171 Rosa chinensis HOM05D001094 ORTHO05D001050 7.2e-07 56.2 30 80.0
THA.LOC104806831 Tarenaya hassleriana HOM05D001094 ORTHO05D001050 7.2e-07 56.2 30 80.0
CAN.G643.15 Capsicum annuum HOM05D001094 ORTHO05D001050 9.4e-07 55.8 49 55.1
Eucgr.H05081 Eucalyptus grandis HOM05D001094 ORTHO05D001050 9.4e-07 55.8 49 55.1
Glyma.08G002700 Glycine max HOM05D001094 ORTHO05D001050 9.4e-07 55.8 49 55.1
SalBow7G4860 Salvia bowleyana HOM05D001094 ORTHO05D001050 9.4e-07 55.8 49 55.1
TWI34G0055 Tripterygium wilfordii HOM05D001094 ORTHO05D001050 9.4e-07 55.8 49 53.1
vmacro12766 Vaccinium macrocarpon HOM05D001094 ORTHO05D001050 9.4e-07 55.8 49 57.1
Atru.chr13.1505 Acer truncatum HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 55.1
Cpa.g.sc64.104 Carica papaya HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 55.1
CiPaw.15G087400 Carya illinoinensis HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 53.1
Medtr8g094600 Medicago truncatula HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 51.0
Nn1g08868 Nelumbo nucifera HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 53.1
Psat7g043800 Pisum sativum HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 51.0
Potri.002G081800 Populus trichocarpa HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 55.1
Sabra02G0064100 Salix brachista HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 55.1
Sed0016349 Sechium edule HOM05D001094 ORTHO05D001050 1.2e-06 55.5 49 55.1
Ah.05g170960 Amaranthus hybridus HOM05D001094 ORTHO05D001050 1.6e-06 55.1 49 53.1
Mapoly0030s0099 Marchantia polymorpha HOM05D001094 ORTHO05D001050 1.6e-06 55.1 49 53.1
Os11g0186200 Oryza sativa ssp. japonica HOM05D001094 ORTHO05D001050 1.6e-06 55.1 49 53.1
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 2.1e-06 54.7 48 54.2
SGA_v2.0_scaffold52G18955 Striga asiatica HOM05D001094 ORTHO05D001050 2.1e-06 54.7 30 76.7
ATR0584G039 Amborella trichopoda HOM05D001094 ORTHO05D001050 2.7e-06 54.3 49 53.1
Lalb_Chr07g0184221 Lupinus albus HOM05D001094 ORTHO05D001050 2.7e-06 54.3 30 76.7
Nn5g28354 Nelumbo nucifera HOM05D001094 ORTHO05D001050 2.7e-06 54.3 49 51.0
Rhsim10G0128400 Rhododendron simsii HOM05D001094 ORTHO05D001050 2.7e-06 54.3 48 56.2
Sed0002719 Sechium edule HOM05D001094 ORTHO05D001050 2.7e-06 54.3 49 53.1
TPR.G37436 Trifolium pratense HOM05D001094 ORTHO05D001050 2.7e-06 54.3 49 49.0
HPP92_009277 Vanilla planifolia HOM05D001094 ORTHO05D001050 2.7e-06 54.3 30 80.0
VMungo0647G2132 Vigna mungo HOM05D001094 ORTHO05D001050 2.7e-06 54.3 49 55.1
Cfa002187 Carpinus fangiana HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 53.1
CiPaw.03G116700 Carya illinoinensis HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 53.1
AUR62006888 Chenopodium quinoa HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 53.1
Ciclev10000776m.g Citrus clementina HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 53.1
COL.COLO4_24721 Corchorus olitorius HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 55.1
Haze_25355 Corylus avellana HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 53.1
ECA246G2203 Erigeron canadensis HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 55.1
Manes.18G078950 Manihot esculenta HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 51.0
PGR042G1529 Punica granatum HOM05D001094 ORTHO05D001050 3.6e-06 53.9 30 76.7
PGR102G0059 Punica granatum HOM05D001094 ORTHO05D001050 3.6e-06 53.9 30 76.7
Hund26797 Selenicereus undatus HOM05D001094 ORTHO05D001050 3.6e-06 53.9 49 49.0
CSS0023964 Camellia sinensis var. sinensis HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 53.1
Ca_12634_v3 Cicer arietinum L. HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 53.1
Migut.C01106 Erythranthe guttata HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 51.0
Lj1g0003863 Lotus japonicus HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 53.1
Medtr1g029840 Medicago truncatula HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 53.1
Psat6g041600 Pisum sativum HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 53.1
Sabra05G0135700 Salix brachista HOM05D001094 ORTHO05D001050 4.7e-06 53.5 30 76.7
Thecc.08G128100 Theobroma cacao HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 53.1
GSVIVG01008845001 Vitis vinifera HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 53.1
Zm00001eb201330 Zea mays HOM05D001094 ORTHO05D001050 4.7e-06 53.5 49 51.0
Glyma.14G152100 Glycine max HOM05D001094 ORTHO05D001050 6.1e-06 53.1 49 53.1
Lj6C312T4 Lonicera japonica HOM05D001094 ORTHO05D001050 6.1e-06 53.1 49 51.0
Lalb_Chr10g0101551 Lupinus albus HOM05D001094 ORTHO05D001050 6.1e-06 53.1 49 51.0
Phvul.001G072600 Phaseolus vulgaris HOM05D001094 ORTHO05D001050 6.1e-06 53.1 49 53.1
TWI79G0524 Tripterygium wilfordii HOM05D001094 ORTHO05D001050 6.1e-06 53.1 49 51.0
Aa31sc494G50 Aethionema arabicum HOM05D001094 ORTHO05D001050 8.0e-06 52.8 30 70.0
arahy.Tifrunner.gnm1.ann1.Z6ZXKG Arachis hypogaea HOM05D001094 ORTHO05D001050 8.0e-06 52.8 49 51.0
Lalb_Chr11g0065991 Lupinus albus HOM05D001094 ORTHO05D001050 8.0e-06 52.8 49 51.0
QL10p040492 Quercus lobata HOM05D001094 ORTHO05D001050 8.0e-06 52.8 49 51.0


User provided reference genes

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