Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 3.8e-82 308.1 157 100.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.0e-51 206.1 157 65.0
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.7e-51 204.1 157 63.7
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.7e-50 203.0 156 66.0
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 6.5e-50 201.1 155 62.6
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.9e-49 199.5 155 61.9
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 2.7e-48 195.7 156 64.7
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.8e-47 193.0 157 61.8
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.3e-47 192.6 155 62.6
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-46 190.3 148 64.2
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 3.3e-46 188.7 150 64.7
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.3e-45 186.8 155 61.9
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.8e-45 185.7 157 60.5
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 5.3e-44 181.4 161 60.2
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.5e-43 179.9 168 54.8
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.0e-43 179.5 128 70.3
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 4.5e-43 178.3 155 61.3
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 4.5e-43 178.3 157 58.6
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 7.7e-43 177.6 157 59.2
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.0e-42 177.2 157 58.6
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.3e-42 176.8 118 69.5
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.7e-42 176.4 156 55.8
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.7e-42 176.4 155 57.4
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.2e-42 176.0 159 57.2
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.4e-41 173.3 172 56.4
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.4e-41 173.3 157 58.0
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 7.2e-41 171.0 157 56.1
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.1e-40 169.5 157 57.3
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 2.1e-40 169.5 156 56.4
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 2.7e-40 169.1 158 57.0
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 4.7e-40 168.3 164 57.3
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.7e-40 168.3 158 51.9
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 6.1e-40 167.9 156 57.1
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 8.8e-39 164.1 159 50.9
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 9.7e-38 160.6 155 53.5
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.2e-37 159.5 156 50.0
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.2e-37 159.5 156 54.5
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 3.7e-37 158.7 156 55.1
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 6.3e-37 157.9 156 55.1
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.1e-36 157.1 160 50.6
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.4e-36 156.8 156 53.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.8e-36 156.4 160 56.2
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 4.1e-36 155.2 155 52.9
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 7.0e-36 154.5 160 53.1
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.2e-35 153.7 155 50.3
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.2e-35 153.7 162 50.0
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.2e-35 153.7 156 52.6
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.6e-35 152.5 156 53.8
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.6e-35 152.5 167 48.5
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 5.9e-35 151.4 156 51.9
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 7.7e-35 151.0 161 50.9
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.0e-34 150.6 176 44.9
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.3e-34 150.2 167 48.5
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 2.2e-34 149.4 159 47.2
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 2.2e-34 149.4 161 47.2
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 3.8e-34 148.7 164 52.4
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 8.5e-34 147.5 165 47.9
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.5e-33 146.0 174 46.6
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 3.2e-33 145.6 163 51.5
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 4.2e-33 145.2 168 47.6
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 7.2e-33 144.4 156 49.4
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 9.4e-33 144.1 160 47.5
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 9.4e-33 144.1 158 48.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.6e-32 143.3 165 46.7
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.1e-32 142.9 127 59.1
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 2.1e-32 142.9 176 43.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.7e-32 142.5 167 50.9
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 3.6e-32 142.1 159 49.1
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.6e-32 142.1 174 45.4
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.0e-31 140.6 173 45.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.0e-31 138.7 112 59.8
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.2e-30 137.1 173 42.2
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.5e-30 136.7 173 42.2
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 7.5e-30 134.4 161 47.8
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.3e-29 133.7 168 47.6
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.3e-29 131.3 164 45.1
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.1e-28 129.0 171 46.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 9.1e-28 127.5 156 45.5
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.0e-27 126.3 85 70.6
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 7.7e-27 124.4 145 48.3
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.0e-26 124.0 143 46.2
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-26 122.5 85 68.2
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-25 120.6 85 67.1
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.1e-25 120.6 157 41.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 3.2e-25 119.0 155 41.9
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 5.5e-25 118.2 162 44.4
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.1e-24 116.3 157 41.4
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 3.6e-24 115.5 165 43.6
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 4.7e-24 115.2 159 44.7
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.0e-23 114.0 85 64.7
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 6.8e-23 111.3 113 49.6
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 8.8e-23 110.9 165 42.4
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.6e-22 109.4 188 36.2
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.6e-22 109.4 158 41.1
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 3.4e-22 109.0 170 38.8
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 9.8e-22 107.5 160 42.5
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 9.8e-22 107.5 160 42.5
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.3e-21 107.1 166 41.6
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 8.3e-21 104.4 171 40.4
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.2e-19 100.5 155 38.1
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 2.9e-18 95.9 125 46.4
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.5e-18 94.7 133 43.6
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.5e-17 92.8 85 57.6
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.5e-17 92.8 98 44.9
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 3.3e-17 92.4 191 36.1
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 8.9e-15 84.3 111 38.7
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 8.6e-10 67.8 112 35.7
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 2.1e-08 63.2 125 29.6
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 6.8e-07 58.2 81 46.9
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.2e-06 57.4 52 44.2


User provided reference genes

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