Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 6.2e-24 113.2 55 100.0
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 2.7e-19 97.8 55 81.8
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 6.0e-19 96.7 55 81.8
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 6.0e-19 96.7 55 81.8
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 1.3e-18 95.5 55 80.0
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 1.8e-18 95.1 55 80.0
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 1.8e-18 95.1 55 80.0
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.8e-18 95.1 55 80.0
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 3.9e-18 94.0 55 78.2
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 3.9e-18 94.0 55 76.4
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 6.7e-18 93.2 55 78.2
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 6.7e-18 93.2 55 76.4
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 8.7e-18 92.8 55 76.4
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 8.7e-18 92.8 55 76.4
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 8.7e-18 92.8 55 76.4
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 2.5e-17 91.3 55 76.4
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 7.4e-17 89.7 55 76.4
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 7.4e-17 89.7 55 72.7
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 1.6e-16 88.6 55 74.5
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 70.9
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 4.8e-16 87.0 55 65.5
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 1.1e-15 85.9 55 76.4
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 1.1e-15 85.9 55 76.4
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 1.1e-15 85.9 55 78.2
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 1.8e-15 85.1 55 76.4
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 61.8
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 72.7
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 3.1e-15 84.3 55 72.7
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 58.2
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 65.5
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 69.1
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 63.6
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 63.6
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 2.0e-14 81.6 55 61.8
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 2.0e-14 81.6 55 69.1
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 2.0e-14 81.6 55 69.1
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 63.6
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 63.6
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 63.6
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 61.8
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 61.8
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 61.8
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 63.6
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 4.5e-14 80.5 53 62.3
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 5.8e-14 80.1 55 63.6
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 5.8e-14 80.1 53 66.0
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 7.6e-14 79.7 55 61.8
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 1.0e-13 79.3 55 60.0
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 1.0e-13 79.3 55 67.3
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 1.0e-13 79.3 55 67.3
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 1.7e-13 78.6 52 63.5
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 58.2
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 65.5
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 65.5
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 2.2e-13 78.2 49 69.4
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 60.0
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 63.6
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 67.3
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 3.8e-13 77.4 53 62.3
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 5.0e-13 77.0 54 63.0
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 5.0e-13 77.0 49 71.4
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 5.0e-13 77.0 49 71.4
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 61.8
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 2.5e-12 74.7 47 68.1
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 63.6
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 60.0
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 1.2e-11 72.4 52 63.5
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 2.1e-11 71.6 49 63.3
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 4.6e-11 70.5 55 61.8
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 6.1e-11 70.1 55 58.2
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 3.9e-10 67.4 55 63.6
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 4.3e-09 63.9 55 56.4
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 1.8e-07 58.5 48 52.1
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 3.1e-07 57.8 55 52.7
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 3.1e-07 57.8 49 51.0
Os03g0603500 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 1.2e-06 55.8 48 54.2
TAR374G0214 Trochodendron aralioides HOM05D007944 ORTHO05D010014 4.5e-06 53.9 32 68.8


User provided reference genes

Program Settings