Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 0.0e+00 1185.6 605 100.0
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 7.9e-205 717.6 636 62.6
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 3.9e-204 715.3 642 62.3
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.7e-197 692.6 637 60.0
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 6.7e-196 688.0 637 59.8
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 9.4e-190 667.5 635 57.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 3.6e-189 665.6 620 58.5
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 8.0e-189 664.5 636 58.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.0e-183 647.5 644 56.5
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 4.2e-182 642.1 649 57.0
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 8.0e-181 637.9 649 55.8
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.0e-180 636.0 638 56.0
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.0e-180 635.6 635 56.7
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.6e-179 632.9 576 60.6
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 5.7e-179 631.7 642 55.8
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 7.0e-177 624.8 611 57.8
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 9.2e-177 624.4 641 56.3
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.6e-176 623.6 644 55.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.6e-176 623.6 642 54.4
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 3.5e-176 622.5 633 56.1
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 6.6e-175 618.2 639 56.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 4.3e-174 615.5 640 56.4
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-173 613.6 611 55.8
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.6e-173 613.6 640 54.2
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 6.1e-173 611.7 637 54.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.8e-172 610.1 607 55.7
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 5.7e-171 605.1 607 55.7
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.7e-170 603.6 603 56.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 3.7e-170 602.4 619 55.3
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 6.4e-170 601.7 652 54.6
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 6.4e-170 601.7 641 53.5
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.1e-169 600.9 609 56.2
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.1e-169 600.9 641 53.5
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 9.2e-169 597.8 644 55.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.6e-168 597.0 637 54.0
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.0e-168 596.7 652 54.1
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.0e-168 596.7 609 55.8
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 5.9e-168 595.1 631 54.8
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 7.8e-168 594.7 477 67.5
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 8.6e-167 591.3 610 54.9
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.1e-166 590.9 647 53.6
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 7.3e-166 588.2 639 52.7
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 9.5e-166 587.8 631 54.0
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.8e-165 586.3 632 53.0
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 3.6e-165 585.9 607 54.4
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 6.2e-165 585.1 626 54.3
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.8e-164 583.6 627 54.5
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 5.2e-164 582.0 598 55.2
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 8.9e-164 581.3 652 53.2
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.0e-163 580.1 634 52.8
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 7.5e-163 578.2 637 53.1
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.2e-162 576.6 639 53.4
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 8.3e-162 574.7 634 52.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.4e-161 573.9 626 53.0
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 5.4e-161 572.0 631 52.0
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 5.4e-161 572.0 656 51.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.2e-160 570.9 628 49.5
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.6e-160 568.9 626 52.9
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 6.0e-160 568.5 631 51.7
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 6.0e-160 568.5 613 54.2
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.0e-159 567.8 626 52.6
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.3e-159 566.6 628 52.2
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 5.0e-159 565.5 627 53.0
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 6.6e-159 565.1 631 51.2
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 4.3e-158 562.4 610 53.6
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.3e-158 561.6 613 52.9
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.5e-158 561.2 623 52.5
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.2e-157 560.8 633 53.4
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 3.6e-157 559.3 665 49.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 8.1e-157 558.1 652 51.2
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.4e-156 557.4 627 51.2
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.8e-156 557.0 637 52.4
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.0e-156 555.8 627 52.8
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 8.9e-156 554.7 651 50.8
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 9.8e-155 551.2 636 51.4
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.2e-154 550.1 651 50.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.4e-153 547.4 635 51.0
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 4.1e-153 545.8 630 50.5
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 7.1e-153 545.0 653 50.7
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.5e-152 542.7 623 50.4
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 9.5e-150 534.6 628 49.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.8e-149 533.1 608 49.2
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 3.6e-149 532.7 637 49.9
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.7e-146 523.9 652 48.6
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.8e-146 522.7 618 47.6
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.9e-145 520.4 614 50.3
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 3.2e-145 519.6 580 51.4
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 5.4e-145 518.8 587 48.0
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 6.0e-144 515.4 524 56.3
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.9e-142 510.4 638 48.0
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 5.2e-140 502.3 649 46.7
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 5.2e-140 502.3 665 46.9
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 6.9e-140 501.9 643 47.1
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.5e-139 500.7 643 47.0
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 2.6e-139 500.0 642 46.9
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.2e-138 496.9 518 53.7
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.9e-138 495.7 632 47.5
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.4e-137 494.2 635 48.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.4e-137 493.4 635 47.9
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-136 491.1 638 48.0
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.1e-136 490.3 643 46.8
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.6e-136 489.2 639 47.3
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 7.8e-136 488.4 638 46.1
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.0e-135 486.5 612 47.5
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 8.7e-135 485.0 638 47.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.1e-134 484.6 636 47.2
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.5e-134 483.4 632 47.8
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.2e-130 470.3 617 47.2
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.5e-126 456.8 604 44.2
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 3.3e-126 456.4 601 46.8
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.9e-118 430.6 635 42.8
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.0e-111 406.8 630 41.4
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 3.0e-111 406.8 542 44.8
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 5.5e-105 386.0 678 37.9
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 7.4e-102 375.6 545 42.6
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.3e-93 348.2 416 48.1
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 4.8e-85 319.7 726 33.5
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.5e-82 308.9 676 36.5
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.0e-78 297.7 607 34.9
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-77 295.0 685 34.2
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.5e-65 253.1 806 28.2
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 8.0e-64 249.2 441 38.3
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.1e-60 237.3 639 30.5
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 4.4e-54 216.9 438 34.7
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.0e-50 203.4 424 33.5
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 4.6e-43 180.3 136 68.4
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 6.2e-40 169.9 393 30.0
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.1e-40 169.5 160 56.2
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 5.2e-39 166.8 299 36.8
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 7.5e-38 162.9 208 45.2
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.1e-32 144.8 95 68.4
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.1e-32 144.8 121 62.0
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.9e-28 131.7 151 47.7
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 7.1e-28 129.8 165 49.7
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 5.1e-26 123.6 108 54.6
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.1e-17 95.9 248 35.5
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.3e-13 82.4 125 35.2
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.7e-13 82.0 96 51.0
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 3.7e-08 64.3 411 26.3
Mapoly0005s0159 Marchantia polymorpha HOM05D001439 ORTHO05D002726 6.9e-07 60.1 68 51.5
THA.LOC104801160 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 6.9e-07 60.1 78 42.3
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 9.0e-07 59.7 112 38.4
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.5e-06 58.9 178 31.5
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.0e-06 58.5 70 42.9
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 4.5e-06 57.4 42 66.7
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 5.8e-06 57.0 99 34.3
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 7.6e-06 56.6 58 50.0
Gohir.A11G145900 Gossypium hirsutum HOM05D001439 ORTHO05D007599 9.9e-06 56.2 103 35.9
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 9.9e-06 56.2 86 40.7


User provided reference genes

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