Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.5e-127 458.8 227 100.0
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.8e-109 397.5 214 93.0
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 1.9e-82 309.7 216 74.1
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.9e-80 302.0 216 73.6
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 5.1e-80 301.6 216 73.1
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 9.6e-79 297.4 219 70.8
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.6e-78 296.6 215 71.6
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.6e-78 296.6 215 71.6
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 2.8e-78 295.8 214 71.5
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 4.8e-78 295.0 215 71.2
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 6.2e-78 294.7 215 71.2
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.4e-77 293.5 215 70.2
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.4e-77 293.5 179 84.9
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.2e-76 290.4 215 68.4
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 1.3e-75 287.0 215 68.8
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.3e-75 287.0 228 66.7
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 2.9e-75 285.8 215 67.0
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 7.1e-74 281.2 215 66.0
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 9.3e-74 280.8 215 65.6
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 6.0e-73 278.1 215 66.5
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.0e-72 277.3 216 67.6
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.3e-72 276.9 182 76.9
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.8e-72 276.6 215 67.0
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.9e-72 275.4 215 64.7
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 6.7e-72 274.6 215 67.4
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 6.7e-72 274.6 215 66.5
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 2.5e-71 272.7 216 64.8
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.5e-71 272.7 215 63.7
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.7e-71 271.6 215 64.2
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 9.6e-71 270.8 215 63.7
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 9.6e-71 270.8 215 67.0
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.7e-70 268.9 216 65.7
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 8.2e-70 267.7 216 64.4
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 2.4e-69 266.2 219 63.9
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 4.1e-69 265.4 215 65.6
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 5.3e-69 265.0 214 64.5
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 6.9e-69 264.6 217 64.1
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 9.0e-69 264.2 216 64.4
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.5e-68 263.5 251 60.2
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 2.6e-68 262.7 215 66.0
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.3e-67 260.4 216 63.0
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.9e-67 259.2 214 64.5
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 1.9e-66 256.5 216 64.8
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.5e-66 256.1 215 64.2
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.2e-65 253.8 216 62.0
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.6e-65 251.9 215 61.9
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 3.9e-64 248.8 216 61.6
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 1.1e-63 247.3 226 64.2
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.4e-61 240.4 215 61.9
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.2e-60 237.3 203 62.6
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 4.5e-60 235.3 217 59.4
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.5e-60 235.3 185 68.6
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 7.7e-60 234.6 216 59.3
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 1.0e-59 234.2 224 58.0
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.7e-59 233.4 215 57.2
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 3.8e-59 232.3 216 58.3
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 6.5e-59 231.5 216 58.3
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.2e-58 229.2 236 55.1
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 9.4e-58 227.6 216 57.9
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 1.6e-57 226.9 221 55.2
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 3.6e-57 225.7 216 58.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.4e-56 223.8 216 56.0
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.1e-55 220.7 216 56.5
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 3.3e-55 219.2 226 57.1
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 3.3e-55 219.2 216 56.9
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 2.2e-54 216.5 215 54.4
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.8e-54 216.1 216 55.6
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.4e-53 213.8 220 57.3
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.4e-53 213.0 220 57.7
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.4e-53 213.0 220 56.4
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 2.4e-53 213.0 181 64.6
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 3.1e-53 212.6 230 53.9
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 4.1e-53 212.2 220 55.5
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.5e-52 210.3 220 57.3
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 4.5e-52 208.8 222 53.6
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.8e-51 205.7 214 54.2
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 8.5e-51 204.5 220 55.9
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.1e-50 204.1 221 52.9
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.1e-50 204.1 221 55.7
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 1.4e-50 203.8 222 52.7
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 2.5e-50 203.0 223 56.5
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 7.2e-50 201.4 217 52.5
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 9.4e-50 201.1 227 50.7
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 2.3e-48 196.4 217 53.0
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 3.0e-48 196.1 216 52.3
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 8.8e-48 194.5 216 53.7
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 2.6e-47 193.0 229 53.3
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 7.4e-47 191.4 230 52.6
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 2.2e-46 189.9 220 53.2
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.4e-45 187.2 214 49.5
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 1.4e-45 187.2 279 45.2
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 3.1e-45 186.0 232 51.3
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 3.5e-44 182.6 229 51.5
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 4.5e-44 182.2 279 44.4
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 2.2e-43 179.9 266 44.4
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 9.4e-42 174.5 189 51.9
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 3.0e-40 169.5 186 52.7
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.0e-39 166.8 218 45.4
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.2e-36 157.5 180 52.8
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.2e-36 157.5 202 45.0
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 3.8e-35 152.5 216 45.8
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.1e-34 151.0 101 78.2
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 5.5e-34 148.7 225 48.9
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 4.0e-32 142.5 136 59.6
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.8e-32 141.7 218 40.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 9.8e-31 137.9 218 39.4
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 2.8e-30 136.3 113 64.6
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.4e-29 134.0 218 39.0
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.2e-28 131.0 153 50.3
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 3.5e-28 129.4 101 67.3
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.2e-27 126.7 146 49.3
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 5.5e-26 122.1 115 55.7
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.2e-25 120.9 101 65.3
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 5.7e-23 112.1 173 41.6
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.0e-11 74.7 218 28.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 5.6e-10 68.9 113 38.1
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 7.5e-07 58.5 207 30.9
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 4.9e-06 55.8 70 50.0
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 4.9e-06 55.8 70 50.0


User provided reference genes

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