Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 0.0e+00 1538.9 840 100.0
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.0e-270 936.0 736 75.4
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 2.0e-198 696.8 549 68.9
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 4.4e-185 652.5 525 65.5
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 4.1e-183 646.0 521 67.0
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.2e-182 644.4 521 65.1
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 2.6e-177 626.7 526 63.7
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 4.2e-172 609.4 532 62.4
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 8.0e-171 605.1 523 61.0
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 8.8e-170 601.7 530 59.6
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 5.7e-169 599.0 537 59.8
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 1.7e-168 597.4 528 60.2
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 1.6e-166 590.9 525 60.2
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.6e-166 590.9 536 59.5
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 3.5e-166 589.7 524 60.7
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 4.5e-166 589.3 526 59.5
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 1.0e-165 588.2 538 59.5
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 1.3e-165 587.8 525 59.8
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 1.7e-165 587.4 526 60.6
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 2.2e-165 587.0 526 58.6
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.2e-165 587.0 535 58.9
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 5.0e-165 585.9 524 60.1
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 6.5e-165 585.5 525 58.9
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.5e-164 584.3 540 58.9
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 1.5e-164 584.3 542 57.9
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 1.5e-164 584.3 535 57.9
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 2.5e-164 583.6 534 59.2
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 4.2e-164 582.8 520 60.0
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.6e-163 580.9 520 59.8
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 2.1e-163 580.5 525 57.7
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 2.1e-163 580.5 520 61.0
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 8.0e-163 578.6 535 57.4
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 5.2e-162 575.9 515 59.0
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 2.0e-161 573.9 533 58.2
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 3.4e-161 573.2 529 58.2
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 1.1e-159 568.2 526 58.6
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 3.1e-159 566.6 529 58.8
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 3.1e-159 566.6 529 58.2
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 3.5e-158 563.1 522 57.3
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 2.9e-157 560.1 523 57.9
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 1.2e-155 554.7 530 57.4
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 2.1e-155 553.9 527 57.3
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 1.2e-153 548.1 527 56.2
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 4.4e-153 546.2 529 56.3
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 1.3e-152 544.7 522 56.5
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 1.7e-152 544.3 537 55.1
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 1.7e-152 544.3 526 56.1
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 6.4e-152 542.3 527 56.0
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 1.1e-151 541.6 533 56.5
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 1.1e-151 541.6 527 58.3
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 4.1e-151 539.7 521 57.2
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 1.2e-150 538.1 529 55.6
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 1.0e-149 535.0 531 55.9
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 5.0e-149 532.7 531 55.4
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 5.0e-149 532.7 547 54.1
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 3.3e-148 530.0 526 56.3
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 7.3e-148 528.9 526 56.5
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.2e-147 528.1 527 55.8
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 2.8e-147 526.9 526 56.3
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 1.0e-146 525.0 528 54.9
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 1.8e-146 524.2 548 52.7
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 2.3e-146 523.9 523 53.7
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 5.2e-146 522.7 530 54.2
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 8.9e-146 521.9 532 54.7
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 2.0e-145 520.8 529 54.6
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 5.8e-145 519.2 542 52.6
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 2.9e-144 516.9 529 55.0
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 8.3e-144 515.4 528 54.0
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 1.6e-142 511.1 521 56.4
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 2.7e-142 510.4 530 53.6
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 2.3e-141 507.3 526 54.2
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 1.9e-140 504.2 527 53.5
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 2.5e-140 503.8 526 54.0
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 7.3e-140 502.3 434 64.1
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 4.7e-139 499.6 530 53.2
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.5e-137 494.6 439 58.8
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 2.2e-136 490.7 466 56.9
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 1.1e-135 488.4 521 52.0
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 7.1e-135 485.7 523 53.5
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 2.7e-134 483.8 526 50.8
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 2.3e-133 480.7 534 49.6
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 3.0e-133 480.3 527 50.9
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 5.1e-133 479.6 430 60.5
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 5.1e-133 479.6 520 50.6
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 1.5e-132 478.0 555 50.3
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 1.6e-131 474.6 522 51.0
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 1.8e-130 471.1 519 51.3
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 1.2e-129 468.4 435 57.9
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 4.4e-129 466.5 521 49.1
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 5.4e-127 459.5 529 49.3
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 7.1e-127 459.1 521 51.8
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 5.1e-125 453.0 521 49.9
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 8.9e-122 442.2 512 49.4
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 8.9e-122 442.2 512 49.4
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 3.8e-120 436.8 513 48.9
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.3e-112 411.8 439 54.7
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.9e-108 397.9 523 46.7
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 8.1e-107 392.5 446 50.9
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 1.2e-102 378.6 393 53.2
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 6.7e-101 372.9 554 42.2
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 6.7e-93 346.3 380 49.7
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 9.3e-87 325.9 468 42.1
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 2.7e-86 324.3 469 43.5
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 1.7e-80 305.1 467 43.0
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 7.2e-71 273.1 309 51.1
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.8e-69 268.5 224 63.4
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.4e-61 242.3 225 55.1
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 6.1e-54 216.9 509 33.8
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 2.3e-45 188.3 249 46.6
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 1.1e-34 152.9 376 32.4
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 4.1e-34 151.0 592 27.7
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 4.7e-22 110.9 168 42.9
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 8.4e-11 73.6 47 70.2
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 7.8e-09 67.0 93 38.7
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 2.8e-06 58.5 89 36.0
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 6.2e-06 57.4 131 35.1
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 8.1e-06 57.0 31 83.9


User provided reference genes

Program Settings