Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0052F.1_g030780 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 5.7e-135 484.2 235 100.0
Hma1.2p1_0472F.1_g160005 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 5.7e-135 484.2 235 100.0
Hma1.2p1_0472F.1_g160020 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 1.6e-132 476.1 235 98.3
Hma1.2p1_0370F.1_g137770 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 2.5e-106 389.0 233 79.8
Hma1.2p1_0472F.1_g159990 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 9.3e-101 370.5 213 83.1
vmacro22834 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 4.4e-95 351.7 234 74.8
Rhsim04G0073100 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.3e-94 350.1 232 73.7
Rhsim05G0197900 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.9e-94 349.0 234 73.1
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 6.4e-94 347.8 227 75.8
Rhsim08G0006900 Rhododendron simsii HOM05D005276 ORTHO05D006813 7.1e-93 344.4 227 74.9
Rhsim04G0165600 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.7e-92 342.4 233 73.4
RcHm_v2.0_Chr5g0076681 Rosa chinensis HOM05D005276 ORTHO05D006813 3.0e-91 339.0 230 71.7
TWI23G0671 Tripterygium wilfordii HOM05D005276 ORTHO05D006813 1.9e-90 336.3 232 70.7
Actinidia07622 Actinidia chinensis HOM05D005276 ORTHO05D006813 1.6e-89 333.2 231 71.4
Rhsim05G0142600 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.4e-88 329.3 229 70.7
PGR031G1219 Punica granatum HOM05D005276 ORTHO05D006813 1.8e-80 303.1 219 66.7
Hma1.2p1_0052F.1_g030770 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 2.6e-79 299.3 235 66.8
Hma1.2p1_0472F.1_g160029 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 2.6e-79 299.3 235 66.8
Hma1.2p1_2291F.1_g319080 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 8.4e-78 294.3 176 80.1
Ca_08210_v3 Cicer arietinum L. HOM05D005276 ORTHO05D006813 7.9e-76 287.7 226 61.5
Medtr8g038070 Medicago truncatula HOM05D005276 ORTHO05D006813 4.8e-73 278.5 227 60.4
Medtr0695s0030 Medicago truncatula HOM05D005276 ORTHO05D006813 1.1e-72 277.3 227 59.9
Medtr8g038100 Medicago truncatula HOM05D005276 ORTHO05D006813 1.8e-72 276.6 231 59.3
TPR.G33522 Trifolium pratense HOM05D005276 ORTHO05D006813 1.8e-72 276.6 225 59.1
Psat0s876g0040 Pisum sativum HOM05D005276 ORTHO05D006813 4.1e-72 275.4 227 59.9
Psat5g117800 Pisum sativum HOM05D005276 ORTHO05D006813 1.2e-71 273.9 226 59.7
Psat5g117840 Pisum sativum HOM05D005276 ORTHO05D006813 1.2e-71 273.9 226 59.7
PGR102G1949 Punica granatum HOM05D005276 ORTHO05D006813 4.5e-71 271.9 245 59.2
TPR.G33532 Trifolium pratense HOM05D005276 ORTHO05D006813 7.6e-71 271.2 226 58.4
Psat0s876g0120 Pisum sativum HOM05D005276 ORTHO05D006813 1.3e-70 270.4 227 58.6
Medtr0057s0100 Medicago truncatula HOM05D005276 ORTHO05D006813 2.2e-70 269.6 226 56.6
EL10Ac1g01354 Beta vulgaris HOM05D005276 ORTHO05D006813 6.5e-70 268.1 231 55.8
EL10Ac1g01356 Beta vulgaris HOM05D005276 ORTHO05D006813 6.5e-70 268.1 231 55.8
EL10Ac1g01358 Beta vulgaris HOM05D005276 ORTHO05D006813 6.5e-70 268.1 231 55.8
Phvul.007G276500 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 8.4e-70 267.7 228 57.5
Psat0s1021g0280 Pisum sativum HOM05D005276 ORTHO05D006813 1.4e-69 266.9 226 56.6
EL10Ac3g05487 Beta vulgaris HOM05D005276 ORTHO05D006813 2.5e-69 266.2 230 56.1
Medtr0057s0170 Medicago truncatula HOM05D005276 ORTHO05D006813 5.5e-69 265.0 226 56.2
Phvul.007G276200 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.5e-68 262.3 225 56.0
Phvul.007G276100 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 6.1e-68 261.5 225 56.9
PGR102G3141 Punica granatum HOM05D005276 ORTHO05D006813 1.0e-67 260.8 235 57.4
Psat0s3494g0040 Pisum sativum HOM05D005276 ORTHO05D006813 2.3e-67 259.6 227 57.3
Psat1g110680 Pisum sativum HOM05D005276 ORTHO05D006813 2.3e-67 259.6 227 57.3
VMungo0720G3131 Vigna mungo HOM05D005276 ORTHO05D006813 3.0e-67 259.2 224 57.1
Medtr7g103990 Medicago truncatula HOM05D005276 ORTHO05D006813 6.7e-67 258.1 228 57.5
Phvul.007G275900 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.9e-66 256.5 225 56.0
Phvul.007G276000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.9e-66 256.5 228 56.1
Phvul.008G252000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 2.5e-66 256.1 225 56.4
CSS0029999 Camellia sinensis var. sinensis HOM05D005276 ORTHO05D006813 5.7e-66 255.0 154 77.3
VMungo0720G2128 Vigna mungo HOM05D005276 ORTHO05D006813 7.4e-66 254.6 228 56.1
EL10Ac1g01352 Beta vulgaris HOM05D005276 ORTHO05D006813 2.8e-65 252.7 229 53.7
CSS0004680 Camellia sinensis var. sinensis HOM05D005276 ORTHO05D006813 2.8e-65 252.7 225 58.2
VMungo0720G1899 Vigna mungo HOM05D005276 ORTHO05D006813 3.7e-65 252.3 224 55.4
VMungo0720G2700 Vigna mungo HOM05D005276 ORTHO05D006813 4.8e-65 251.9 223 54.3
Ca_23693_v3 Cicer arietinum L. HOM05D005276 ORTHO05D006813 3.1e-64 249.2 272 48.9
Phvul.007G277100 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.1e-64 249.2 225 54.7
AUR62014887 Chenopodium quinoa HOM05D005276 ORTHO05D006813 1.2e-63 247.3 229 52.0
PGR102G1815 Punica granatum HOM05D005276 ORTHO05D006813 1.3e-62 243.8 241 53.9
vmacro00373 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 3.8e-62 242.3 169 72.2
AUR62014758 Chenopodium quinoa HOM05D005276 ORTHO05D006813 5.0e-62 241.9 233 53.6
Phvul.007G275800 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 5.0e-62 241.9 224 54.0
Ah.02g117180 Amaranthus hybridus HOM05D005276 ORTHO05D006813 5.5e-61 238.4 230 51.7
Phvul.009G133400 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 9.4e-61 237.7 225 52.9
AUR62016119 Chenopodium quinoa HOM05D005276 ORTHO05D006813 1.6e-60 236.9 234 52.6
Phvul.007G276300 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 4.6e-60 235.3 225 51.1
Phvul.007G277000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 5.1e-59 231.9 207 54.6
Rhsim05G0197600 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.0e-58 229.9 233 53.6
Os04g0213100 Oryza sativa ssp. japonica HOM05D005276 ORTHO05D006813 4.3e-58 228.8 241 50.6
Phvul.007G275700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 7.4e-58 228.0 207 54.1
RcHm_v2.0_Chr5g0076491 Rosa chinensis HOM05D005276 ORTHO05D006813 9.1e-56 221.1 144 73.6
Medtr6g040290 Medicago truncatula HOM05D005276 ORTHO05D006813 3.4e-55 219.2 231 48.9
AUR62041391 Chenopodium quinoa HOM05D005276 ORTHO05D006813 2.2e-54 216.5 233 50.2
Ah.10g029400 Amaranthus hybridus HOM05D005276 ORTHO05D006813 1.4e-53 213.8 226 45.6
PGR102G2116 Punica granatum HOM05D005276 ORTHO05D006813 7.9e-52 208.0 222 49.5
VMungo0720G1439 Vigna mungo HOM05D005276 ORTHO05D006813 2.0e-50 203.4 224 49.1
EL10Ac4g09362 Beta vulgaris HOM05D005276 ORTHO05D006813 2.6e-50 203.0 235 49.4
Phvul.007G275600 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 2.6e-50 203.0 227 47.6
Ah.02g121010 Amaranthus hybridus HOM05D005276 ORTHO05D006813 2.8e-49 199.5 230 43.9
EL10Ac2g04799 Beta vulgaris HOM05D005276 ORTHO05D006813 1.4e-48 197.2 236 46.2
Psat0s971g0080 Pisum sativum HOM05D005276 ORTHO05D006813 2.4e-48 196.4 229 46.7
EL10Ac1g01353 Beta vulgaris HOM05D005276 ORTHO05D006813 3.1e-48 196.1 244 45.1
EL10Ac1g02090 Beta vulgaris HOM05D005276 ORTHO05D006813 3.1e-48 196.1 228 46.5
EL10Ac1g02109 Beta vulgaris HOM05D005276 ORTHO05D006813 1.2e-47 194.1 228 46.5
Phvul.007G263500 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.1e-45 187.6 230 46.1
Ca_03455_v3 Cicer arietinum L. HOM05D005276 ORTHO05D006813 5.5e-45 185.3 227 47.1
EL10Ac2g04798 Beta vulgaris HOM05D005276 ORTHO05D006813 2.7e-44 183.0 232 45.3
Medtr7g012000 Medicago truncatula HOM05D005276 ORTHO05D006813 1.4e-43 180.6 212 46.7
Medtr1g066530 Medicago truncatula HOM05D005276 ORTHO05D006813 1.8e-43 180.3 226 43.4
Medtr6g073540 Medicago truncatula HOM05D005276 ORTHO05D006813 8.8e-43 177.9 228 46.5
Lj3g0023477 Lotus japonicus HOM05D005276 ORTHO05D006813 4.4e-42 175.6 126 65.1
Medtr6g048620 Medicago truncatula HOM05D005276 ORTHO05D006813 2.2e-41 173.3 224 42.4
RcHm_v2.0_Chr5g0076801 Rosa chinensis HOM05D005276 ORTHO05D006813 2.8e-41 172.9 129 67.4
TPR.G33545 Trifolium pratense HOM05D005276 ORTHO05D006813 3.7e-41 172.6 222 42.3
EL10Ac1g02097 Beta vulgaris HOM05D005276 ORTHO05D006813 8.2e-41 171.4 205 45.4
EL10Ac1g01355 Beta vulgaris HOM05D005276 ORTHO05D006813 1.1e-40 171.0 136 57.4
EL10Ac1g01357 Beta vulgaris HOM05D005276 ORTHO05D006813 1.1e-40 171.0 136 57.4
RcHm_v2.0_Chr5g0076401 Rosa chinensis HOM05D005276 ORTHO05D006813 1.4e-40 170.6 124 69.4
Phvul.007G263700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 2.0e-39 166.8 209 44.0
AUR62024089 Chenopodium quinoa HOM05D005276 ORTHO05D006813 1.3e-38 164.1 223 40.8
Medtr6g045077 Medicago truncatula HOM05D005276 ORTHO05D006813 5.0e-38 162.2 223 39.9
Medtr6g072470 Medicago truncatula HOM05D005276 ORTHO05D006813 1.9e-37 160.2 212 45.8
Phvul.007G276401 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.9e-37 160.2 137 54.7
Ah.16g101350 Amaranthus hybridus HOM05D005276 ORTHO05D038198 5.5e-37 158.7 241 41.5
Medtr6g048910 Medicago truncatula HOM05D005276 ORTHO05D006813 6.1e-36 155.2 231 39.8
TPR.G10459 Trifolium pratense HOM05D005276 ORTHO05D006813 1.4e-35 154.1 223 37.7
Medtr0807s0020 Medicago truncatula HOM05D005276 ORTHO05D006813 1.8e-35 153.7 225 39.6
Rhsim10G0134200 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.0e-35 152.5 230 41.3
Medtr4g102470 Medicago truncatula HOM05D005276 ORTHO05D006813 4.4e-34 149.1 183 44.3
VMungo0720G2085 Vigna mungo HOM05D005276 ORTHO05D006813 7.5e-34 148.3 141 56.0
Dinv42431 Davidia involucrata HOM05D005276 ORTHO05D006813 2.7e-31 139.8 196 41.3
Medtr6g048810 Medicago truncatula HOM05D005276 ORTHO05D006813 2.7e-31 139.8 301 29.9
AUR62037739 Chenopodium quinoa HOM05D005276 ORTHO05D038198 2.2e-30 136.7 219 40.6
Medtr0216s0030 Medicago truncatula HOM05D005276 ORTHO05D006813 1.9e-29 133.7 199 38.7
vmacro13228 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 3.2e-29 132.9 234 38.5
Phvul.002G269700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.2e-28 131.0 140 46.4
RcHm_v2.0_Chr5g0076341 Rosa chinensis HOM05D005276 ORTHO05D006813 2.1e-28 130.2 108 60.2
Phvul.007G276700 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 8.0e-28 128.3 113 53.1
AUR62016935 Chenopodium quinoa HOM05D005276 ORTHO05D006813 1.0e-27 127.9 168 44.0
RcHm_v2.0_Chr5g0076541 Rosa chinensis HOM05D005276 ORTHO05D006813 1.2e-26 124.4 81 74.1
Lj6C375G5 Lonicera japonica HOM05D005276 ORTHO05D001431 9.8e-26 121.3 145 44.1
TPR.G28516 Trifolium pratense HOM05D005276 ORTHO05D006813 1.7e-25 120.6 139 47.5
Medtr6g049040 Medicago truncatula HOM05D005276 ORTHO05D006813 1.0e-22 111.3 132 46.2
Medtr6g048880 Medicago truncatula HOM05D005276 ORTHO05D006813 3.8e-22 109.4 180 36.1
Phvul.002G268600 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 8.0e-20 101.7 230 32.6
EL10Ac1g02098 Beta vulgaris HOM05D005276 ORTHO05D006813 6.8e-19 98.6 84 52.4
Phvul.007G264000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 6.4e-17 92.0 126 42.9
Phvul.007G252000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 2.0e-15 87.0 112 42.0
Lj6C426G9 Lonicera japonica HOM05D005276 ORTHO05D006813 1.7e-14 84.0 64 62.5
vmacro23329 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 8.6e-14 81.6 128 43.0
TPR.G33511 Trifolium pratense HOM05D005276 ORTHO05D006813 2.3e-11 73.6 79 51.9
Dinv42430 Davidia involucrata HOM05D005276 ORTHO05D006813 1.2e-10 71.2 81 45.7
Dinv03816 Davidia involucrata HOM05D031496 ORTHO05D029219 1.3e-09 67.8 59 50.8
TPR.G40462 Trifolium pratense HOM05D005276 ORTHO05D006813 4.9e-09 65.9 110 32.7
Psat1g051400 Pisum sativum HOM05D005276 ORTHO05D006813 4.1e-08 62.8 68 50.0
TPR.G33490 Trifolium pratense HOM05D005276 ORTHO05D006813 1.3e-06 57.8 59 50.8


User provided reference genes

Program Settings