Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0052F.1_g030760 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.5e-74 280.4 139 100.0
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.9e-40 169.5 122 74.6
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.0e-40 167.5 118 75.4
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.1e-27 127.1 117 58.1
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.4e-27 126.7 118 56.8
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 4.0e-27 125.2 118 57.6
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 5.2e-27 124.8 118 56.8
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 6.8e-27 124.4 118 55.9
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 8.4e-25 117.5 118 53.4
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 1.4e-24 116.7 118 54.2
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 9.2e-24 114.0 118 52.5
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.2e-23 113.6 118 53.4
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.2e-23 113.6 118 52.5
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.6e-23 113.2 118 53.4
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 1.6e-23 113.2 118 53.4
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 1.6e-23 113.2 123 50.4
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 1.6e-23 113.2 118 53.4
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 2.7e-23 112.5 118 54.2
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 2.7e-23 112.5 119 52.1
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 2.7e-23 112.5 118 51.7
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 3.5e-23 112.1 118 50.8
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 4.6e-23 111.7 118 50.8
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 6.0e-23 111.3 118 50.0
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 6.0e-23 111.3 118 51.7
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 6.0e-23 111.3 118 51.7
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 7.8e-23 110.9 118 50.8
Hma1.2p1_3239F.1_g334310 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.0e-22 110.5 75 77.3
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.3e-22 110.2 118 50.0
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 1.7e-22 109.8 117 52.1
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 1.7e-22 109.8 118 50.8
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 3.9e-22 108.6 147 43.5
Ah.12g056180 Amaranthus hybridus HOM05D001579 ORTHO05D003470 5.1e-22 108.2 118 46.6
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 6.6e-22 107.8 118 49.2
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 8.6e-22 107.5 128 46.9
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 1.1e-21 107.1 118 47.5
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.1e-21 107.1 118 50.0
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 1.1e-21 107.1 119 52.9
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.5e-21 106.7 151 42.4
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.9e-21 106.3 110 53.6
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 1.9e-21 106.3 118 48.3
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 2.5e-21 105.9 156 42.3
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.5e-21 105.9 118 49.2
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 3.3e-21 105.5 119 52.1
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 3.3e-21 105.5 119 52.1
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 4.3e-21 105.1 119 51.3
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 5.6e-21 104.8 118 49.2
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.6e-21 104.8 118 49.2
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 5.6e-21 104.8 118 50.8
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 7.3e-21 104.4 118 51.7
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 7.3e-21 104.4 121 48.8
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 7.3e-21 104.4 118 49.2
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 9.6e-21 104.0 119 50.4
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 9.6e-21 104.0 119 50.4
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 9.6e-21 104.0 117 49.6
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 1.2e-20 103.6 119 50.4
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 1.6e-20 103.2 118 45.8
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.6e-20 103.2 118 48.3
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.1e-20 102.8 118 48.3
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 2.8e-20 102.4 130 43.1
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 2.8e-20 102.4 119 50.4
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 2.8e-20 102.4 119 51.3
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.8e-20 102.4 118 49.2
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 3.6e-20 102.1 117 50.4
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 3.6e-20 102.1 118 48.3
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 3.6e-20 102.1 118 49.2
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 3.6e-20 102.1 118 47.5
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 4.7e-20 101.7 119 50.4
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 4.7e-20 101.7 118 44.9
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 4.7e-20 101.7 110 50.9
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 6.2e-20 101.3 118 49.2
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 6.2e-20 101.3 119 46.2
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 8.1e-20 100.9 118 45.8
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 1.8e-19 99.8 119 49.6
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 2.4e-19 99.4 119 45.4
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 3.1e-19 99.0 118 45.8
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 3.1e-19 99.0 119 47.1
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.1e-19 99.0 118 46.6
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 3.1e-19 99.0 119 48.7
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 5.2e-19 98.2 118 46.6
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 5.2e-19 98.2 118 46.6
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 5.2e-19 98.2 118 46.6
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 5.2e-19 98.2 118 46.6
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 8.9e-19 97.4 118 50.0
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 8.9e-19 97.4 119 47.9
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.2e-18 97.1 131 44.3
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.2e-18 97.1 118 49.2
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 1.5e-18 96.7 118 45.8
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 3.4e-18 95.5 119 46.2
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 7.6e-18 94.4 119 47.1
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 9.9e-18 94.0 118 47.5
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 1.3e-17 93.6 133 41.4
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 2.2e-17 92.8 120 48.3
Aa31LG3G6010 Aethionema arabicum HOM05D001579 ORTHO05D003470 2.9e-17 92.4 120 45.8
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 4.9e-17 91.7 113 46.0
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 6.4e-17 91.3 122 44.3
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.1e-16 90.5 119 47.1
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 1.4e-16 90.1 158 38.0
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 1.9e-16 89.7 117 42.7
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 4.2e-16 88.6 135 42.2
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 4.2e-16 88.6 112 48.2
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 4.2e-16 88.6 119 46.2
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 5.4e-16 88.2 118 41.5
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 1.2e-15 87.0 119 43.7
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 2.7e-15 85.9 75 58.7
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 3.5e-15 85.5 119 42.0
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 6.0e-15 84.7 116 40.5
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 7.8e-15 84.3 119 37.8
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 7.8e-15 84.3 119 39.5
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.3e-14 83.6 130 37.7
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 2.3e-14 82.8 117 44.4
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 2.3e-14 82.8 117 44.4
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 8.7e-14 80.9 117 43.6
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 8.7e-14 80.9 122 41.0
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 1.1e-13 80.5 117 42.7
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 1.5e-13 80.1 117 41.9
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 1.9e-13 79.7 117 41.9
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 1.9e-13 79.7 117 37.6
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.3e-13 78.6 125 40.0
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 7.3e-13 77.8 119 40.3
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 1.6e-12 76.6 120 40.8
Duzib248G0143 Durio zibethinus HOM05D001579 ORTHO05D003470 2.1e-12 76.3 82 53.7
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.1e-12 76.3 125 39.2
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.8e-12 75.9 125 39.2
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 3.6e-12 75.5 125 38.4
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.6e-12 75.5 124 38.7
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.6e-12 75.5 125 38.4
A10p12820 Brassica napus HOM05D001579 ORTHO05D003470 4.8e-12 75.1 117 41.0
BraA10t43375Z Brassica rapa HOM05D001579 ORTHO05D003470 4.8e-12 75.1 117 41.0
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 4.8e-12 75.1 124 38.7
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.8e-12 75.1 124 38.7
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 6.2e-12 74.7 117 41.0
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 6.2e-12 74.7 89 48.3
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 6.2e-12 74.7 124 39.5
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 6.2e-12 74.7 124 39.5
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.4e-11 72.8 94 41.5
BcaC03g13561 Brassica carinata HOM05D001579 ORTHO05D017611 6.9e-11 71.2 116 40.5
RcHm_v2.0_Chr6g0259031 Rosa chinensis HOM05D001579 ORTHO05D003470 1.5e-10 70.1 120 37.5
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 4.4e-10 68.6 175 32.0
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 7.6e-10 67.8 127 38.6
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 7.6e-10 67.8 86 43.0
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.7e-09 66.6 118 35.6
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 1.7e-09 66.6 117 33.3
BraA01t04658Z Brassica rapa HOM05D001579 ORTHO05D017611 2.9e-09 65.9 90 44.4
A03p60490 Brassica napus HOM05D001579 ORTHO05D017611 8.4e-09 64.3 77 48.1
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 1.1e-08 63.9 146 31.5
A10p05500 Brassica napus HOM05D001579 ORTHO05D017611 1.9e-08 63.2 77 46.8
SEGI_12575 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 2.4e-08 62.8 75 42.7
C02p09550 Brassica napus HOM05D001579 ORTHO05D017611 9.3e-08 60.8 77 46.8
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 1.2e-07 60.5 113 32.7
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 1.6e-07 60.1 117 35.9
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 2.1e-07 59.7 130 32.3
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 3.5e-07 58.9 117 37.6
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 4.6e-07 58.5 117 37.6
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 4.6e-07 58.5 117 37.6
HPP92_002580 Vanilla planifolia HOM05D001579 ORTHO05D003470 4.6e-07 58.5 141 29.1
BcaB01g00883 Brassica carinata HOM05D001579 ORTHO05D003470 6.0e-07 58.2 114 38.6
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 6.0e-07 58.2 117 37.6
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 6.0e-07 58.2 117 37.6
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 6.0e-07 58.2 117 37.6
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 1.3e-06 57.0 119 32.8
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 3.9e-06 55.5 112 33.9
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 5.1e-06 55.1 116 32.8
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 5.1e-06 55.1 53 52.8


User provided reference genes

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