Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.6e-57 223.8 111 100.0
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 4.6e-50 201.1 111 86.5
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.3e-48 194.9 111 83.8
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 3.3e-48 194.9 112 87.5
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 7.3e-48 193.7 112 86.6
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.1e-47 192.2 111 82.9
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.6e-47 191.4 113 83.2
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.7e-47 191.0 113 82.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 3.1e-46 188.3 113 84.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 9.9e-45 183.3 113 84.1
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.6e-42 176.0 141 66.7
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.5e-42 174.9 110 79.1
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 3.9e-41 171.4 111 78.4
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 5.1e-41 171.0 109 77.1
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 5.1e-41 171.0 111 74.8
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 2.5e-40 168.7 114 74.6
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 2.5e-40 168.7 111 76.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 4.3e-40 167.9 115 73.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.3e-40 167.9 110 79.1
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 4.3e-40 167.9 111 74.8
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 7.3e-40 167.2 114 75.4
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 9.6e-40 166.8 111 73.9
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.3e-39 166.4 113 79.6
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 2.1e-39 165.6 111 75.7
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.1e-39 165.6 111 74.8
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.8e-39 165.2 119 71.4
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.6e-39 164.9 113 72.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.2e-39 164.1 111 73.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.2e-39 164.1 111 73.0
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 8.1e-39 163.7 111 73.9
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 8.1e-39 163.7 111 76.6
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.1e-38 163.3 92 83.7
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.1e-38 163.3 111 74.8
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-38 163.3 114 71.9
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.8e-38 162.5 111 73.9
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.8e-38 162.5 111 73.9
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 2.4e-38 162.2 110 71.8
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-38 162.2 111 72.1
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-38 162.2 111 72.1
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.4e-38 162.2 106 74.5
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.4e-38 162.2 106 74.5
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.4e-38 162.2 106 74.5
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.4e-38 162.2 114 71.9
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 5.3e-38 161.0 112 73.2
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 5.3e-38 161.0 111 71.2
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 6.9e-38 160.6 112 73.2
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 6.9e-38 160.6 89 84.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.0e-38 160.2 114 74.6
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.2e-37 159.8 103 74.8
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.5e-37 159.5 110 72.7
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.0e-37 159.1 113 70.8
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.6e-37 158.7 111 72.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.6e-37 158.7 99 79.8
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 3.4e-37 158.3 112 70.5
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 3.4e-37 158.3 83 89.2
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 3.4e-37 158.3 83 89.2
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 7.6e-37 157.1 109 70.6
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 9.9e-37 156.8 113 73.5
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.7e-36 156.0 113 72.6
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.7e-36 156.0 114 70.2
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.2e-36 155.6 113 69.9
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.9e-36 155.2 85 87.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.9e-36 155.2 85 87.1
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.9e-36 155.2 97 79.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.9e-36 154.5 114 69.3
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 6.4e-36 154.1 93 79.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.9e-35 152.5 112 68.8
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.9e-35 152.5 114 67.5
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.4e-35 152.1 145 59.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.2e-35 151.8 116 69.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 4.2e-35 151.4 94 79.8
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 4.2e-35 151.4 113 69.9
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 5.4e-35 151.0 85 82.4
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 9.3e-35 150.2 87 81.6
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 9.3e-35 150.2 87 80.5
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.6e-34 149.4 109 70.6
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.7e-34 148.7 84 85.7
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.7e-34 148.7 112 64.3
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.7e-34 148.7 87 80.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.5e-34 148.3 109 69.7
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.5e-34 148.3 112 64.3
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.0e-34 147.5 108 65.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.0e-33 146.7 110 68.2
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-33 146.4 111 64.9
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.3e-33 146.4 98 77.6
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.3e-33 146.4 85 84.7
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.3e-33 145.6 115 66.1
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.3e-33 145.6 110 65.5
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-33 145.6 113 67.3
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-33 145.6 113 65.5
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-33 145.6 113 67.3
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.3e-33 145.6 113 67.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.3e-33 145.6 114 66.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.0e-33 145.2 113 65.5
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.0e-33 145.2 113 65.5
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.9e-33 144.8 113 66.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.9e-33 144.8 112 65.2
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 5.1e-33 144.4 109 67.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.7e-33 144.1 112 63.4
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 8.7e-33 143.7 112 62.5
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 8.7e-33 143.7 113 64.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.7e-33 143.7 210 43.8
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.1e-32 143.3 113 63.7
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-32 143.3 155 52.9
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 2.5e-32 142.1 112 64.3
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.3e-32 141.7 98 69.4
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 5.6e-32 141.0 112 63.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 7.4e-32 140.6 116 64.7
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 7.4e-32 140.6 85 80.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 7.4e-32 140.6 101 70.3
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 9.6e-32 140.2 85 80.0
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.3e-31 139.8 89 74.2
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.6e-31 139.4 111 61.3
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.6e-31 139.4 101 70.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.6e-31 139.4 113 64.6
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.8e-31 138.7 156 51.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.7e-31 138.3 112 64.3
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 4.8e-31 137.9 112 60.7
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 6.2e-31 137.5 115 63.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 8.1e-31 137.1 105 71.4
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.4e-30 135.6 118 66.1
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.1e-30 135.2 89 74.2
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.0e-29 132.5 112 58.0
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 9.9e-29 130.2 81 75.3
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.7e-28 129.4 130 56.2
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 8.4e-28 127.1 86 73.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.4e-27 125.6 77 71.4
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 9.3e-27 123.6 77 70.1
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.5e-26 121.7 90 66.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 4.6e-26 121.3 72 79.2
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-25 119.4 114 57.9
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.8e-25 119.4 77 68.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.8e-25 119.4 85 68.2
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.3e-25 119.0 83 68.7
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 3.0e-25 118.6 84 70.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-24 115.5 98 63.3
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.1e-23 112.5 89 62.9
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.4e-22 109.8 64 81.2
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.3e-20 103.2 88 62.5
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.3e-20 103.2 91 57.1
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.1e-19 100.1 67 68.7
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 2.5e-19 99.0 91 57.1
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.5e-19 99.0 92 55.4
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.5e-19 97.8 76 68.4
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.0e-17 93.6 74 63.5
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-17 93.2 77 59.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-17 93.2 77 59.7
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.3e-17 92.4 80 57.5
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 6.7e-17 90.9 90 52.2
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.9e-16 89.4 51 82.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 5.7e-16 87.8 50 84.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.8e-15 84.7 61 70.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 6.3e-15 84.3 68 54.4
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.5e-13 79.7 60 63.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 2.5e-11 72.4 97 39.2
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 2.5e-11 72.4 55 58.2
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.5e-11 71.2 46 76.1
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-10 68.9 63 60.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.6e-10 68.2 50 72.0
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.3e-09 65.9 54 64.8
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 3.9e-09 65.1 72 48.6
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 9.7e-08 60.5 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 9.7e-08 60.5 65 44.6


User provided reference genes

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