Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0052F.1_g030560 Hydrangea macrophylla HOM05D009264 ORTHO05D009202 2.0e-64 249.2 150 100.0
CiPaw.08G152800 Carya illinoinensis HOM05D009264 ORTHO05D009202 2.2e-15 86.3 141 44.7
RcHm_v2.0_Chr3g0457951 Rosa chinensis HOM05D009264 ORTHO05D009202 1.1e-11 73.9 140 38.6
Cfa006734 Carpinus fangiana HOM05D009264 ORTHO05D009202 4.3e-11 72.0 125 40.8
FvH4_6g08100 Fragaria vesca HOM05D009264 ORTHO05D009202 1.3e-10 70.5 138 40.6
FAN14G2966 Fragaria x ananassa HOM05D009264 ORTHO05D009202 1.3e-10 70.5 138 40.6
Phvul.001G223400 Phaseolus vulgaris HOM05D011874 ORTHO05D009202 1.7e-10 70.1 70 47.1
PGR083G1195 Punica granatum HOM05D009264 ORTHO05D009202 2.2e-10 69.7 76 50.0
FAN02G1552 Fragaria x ananassa HOM05D009264 ORTHO05D009202 6.3e-10 68.2 137 40.1
FAN09G1104 Fragaria x ananassa HOM05D009264 ORTHO05D009202 8.2e-10 67.8 137 39.4
CiPaw.07G033300 Carya illinoinensis HOM05D009264 ORTHO05D009202 1.4e-09 67.0 143 38.5
CiPaw.07G033600 Carya illinoinensis HOM05D009264 ORTHO05D009202 6.9e-09 64.7 86 45.3
VMungo1383G0753 Vigna mungo HOM05D011874 ORTHO05D009202 6.9e-09 64.7 141 34.0
Actinidia01668 Actinidia chinensis HOM05D009264 ORTHO05D009202 9.1e-09 64.3 68 52.9
Haze_04025 Corylus avellana HOM05D009264 ORTHO05D009202 1.2e-08 63.9 136 40.4
Medtr7g111770 Medicago truncatula HOM05D011874 ORTHO05D009202 1.2e-08 63.9 71 50.7
Phvul.007G211500 Phaseolus vulgaris HOM05D024167 ORTHO05D009202 1.2e-08 63.9 138 34.8
Lj5g0018092 Lotus japonicus HOM05D008942 ORTHO05D009202 1.5e-08 63.5 143 35.0
Manes.08G109000 Manihot esculenta HOM05D009264 ORTHO05D009202 1.5e-08 63.5 147 34.7
Thecc.01G321000 Theobroma cacao HOM05D008942 ORTHO05D009202 1.5e-08 63.5 141 36.9
CSS0022072 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 3.4e-08 62.4 137 40.1
CSS0039740 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 3.4e-08 62.4 136 40.4
Actinidia35505 Actinidia chinensis HOM05D009264 ORTHO05D009202 5.9e-08 61.6 114 37.7
Nn4g25438 Nelumbo nucifera HOM05D008942 ORTHO05D009202 5.9e-08 61.6 135 34.1
Glyma.03G229500 Glycine max HOM05D011874 ORTHO05D009202 7.7e-08 61.2 78 46.2
Nn3g21851 Nelumbo nucifera HOM05D008325 ORTHO05D010336 7.7e-08 61.2 141 36.2
VMungo0720G2651 Vigna mungo HOM05D011874 ORTHO05D009202 7.7e-08 61.2 134 33.6
TPR.G3019 Trifolium pratense HOM05D008942 ORTHO05D009202 2.9e-07 59.3 140 36.4
Lj1g0011687 Lotus japonicus HOM05D011874 ORTHO05D009202 3.8e-07 58.9 70 44.3
Potri.013G005300 Populus trichocarpa HOM05D014622 ORTHO05D009202 3.8e-07 58.9 146 37.7
Sabra14G0085900 Salix brachista HOM05D008942 ORTHO05D009202 5.0e-07 58.5 150 32.0
SalBow7G0413 Salvia bowleyana HOM05D009264 ORTHO05D009202 5.0e-07 58.5 75 46.7
RcHm_v2.0_Chr3g0457921 Rosa chinensis HOM05D009264 ORTHO05D009202 6.5e-07 58.2 141 37.6
Glyma.19G226800 Glycine max HOM05D011874 ORTHO05D009202 8.5e-07 57.8 74 48.6
Glyma.20G094000 Glycine max HOM05D011874 ORTHO05D009202 8.5e-07 57.8 134 37.3
CiPaw.08G085100 Carya illinoinensis HOM05D008942 ORTHO05D009202 1.4e-06 57.0 94 40.4
Lalb_Chr15g0077701 Lupinus albus HOM05D011874 ORTHO05D009202 1.4e-06 57.0 70 48.6
Potri.005G006000 Populus trichocarpa HOM05D014622 ORTHO05D009202 1.4e-06 57.0 151 37.1
Potri.005G006200 Populus trichocarpa HOM05D014622 ORTHO05D009202 1.4e-06 57.0 150 37.3
QL03p008780 Quercus lobata HOM05D009264 ORTHO05D009202 1.4e-06 57.0 66 51.5
QL03p013046 Quercus lobata HOM05D009264 ORTHO05D009202 1.4e-06 57.0 66 51.5
CSS0006203 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 1.9e-06 56.6 73 52.1
FAN05G0864 Fragaria x ananassa HOM05D009264 ORTHO05D009202 2.5e-06 56.2 120 36.7
QL12p033964 Quercus lobata HOM05D008942 ORTHO05D009202 2.5e-06 56.2 147 35.4
Potri.002G190700 Populus trichocarpa HOM05D008942 ORTHO05D009202 3.2e-06 55.8 148 31.8
VMungo0720G1850 Vigna mungo HOM05D024167 ORTHO05D009202 3.2e-06 55.8 147 28.6
Manes.09G179600 Manihot esculenta HOM05D009264 ORTHO05D009202 5.5e-06 55.1 146 33.6
TAR633G2549 Trochodendron aralioides HOM05D009264 ORTHO05D009202 5.5e-06 55.1 137 37.2
Psat0s802g0040 Pisum sativum HOM05D024167 ORTHO05D009202 7.2e-06 54.7 116 33.6
Aqoxy2G02597 Aquilegia oxysepala HOM05D009264 ORTHO05D009202 9.4e-06 54.3 136 33.1
Ciclev10013538m.g Citrus clementina HOM05D009264 ORTHO05D009202 9.4e-06 54.3 145 34.5
Medtr1g086430 Medicago truncatula HOM05D024167 ORTHO05D009202 9.4e-06 54.3 82 37.8


User provided reference genes

Program Settings